View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9148_low_15 (Length: 356)
Name: NF9148_low_15
Description: NF9148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9148_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 25 - 346
Target Start/End: Complemental strand, 21195838 - 21195517
Alignment:
| Q |
25 |
gtaagaacgtgaacaaacaaagagtgaaatttgaaatacaaagaaagaataatgttatgtatttggttagtgtcacataccatgataccagggacagcag |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195838 |
gtaagaacgtgaacaaacaaagagtgaaatttgaaatacaaagaaagaataatgttatgtatttggttagtgtcacataccatgataccagggacagcag |
21195739 |
T |
|
| Q |
125 |
ggggaattctcctgtgaaggagcttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggctt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195738 |
ggggaattctcctgtgaaggagcttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggctt |
21195639 |
T |
|
| Q |
225 |
gaggagaataccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195638 |
gaggagaataccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgt |
21195539 |
T |
|
| Q |
325 |
tctccatccagcaagatctctg |
346 |
Q |
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|||||||||||||||||||||| |
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| T |
21195538 |
tctccatccagcaagatctctg |
21195517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 25 - 346
Target Start/End: Complemental strand, 27251587 - 27251266
Alignment:
| Q |
25 |
gtaagaacgtgaacaaacaaagagtgaaatttgaaatacaaagaaagaataatgttatgtatttggttagtgtcacataccatgataccagggacagcag |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251587 |
gtaagaacgtgaacaaacaaagagtgaaatttgaaatacaaagaaagaataatgttatgtatttggttagtgtcacataccatgataccagggacagcag |
27251488 |
T |
|
| Q |
125 |
ggggaattctcctgtgaaggagcttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggctt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251487 |
ggggaattctcctgtgaaggagcttgagggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggctt |
27251388 |
T |
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| Q |
225 |
gaggagaataccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgt |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27251387 |
gaggagaataccctcaaattggacattgttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctatcaataccatgt |
27251288 |
T |
|
| Q |
325 |
tctccatccagcaagatctctg |
346 |
Q |
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|||||||||||||||||||||| |
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| T |
27251287 |
tctccatccagcaagatctctg |
27251266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 82 - 346
Target Start/End: Complemental strand, 27268316 - 27268052
Alignment:
| Q |
82 |
tgtatttggttagtgtcacataccatgataccagggacagcagggggaattctcctgtgaaggagcttgagggtatagtcagcaactgttgcaggagagg |
181 |
Q |
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|||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
27268316 |
tgtatttggttagtttcacataccatgataccagggacggctggggggattctcctgtgaaggagcttgaggatatagtcagcaactgttgcagaagaga |
27268217 |
T |
|
| Q |
182 |
ccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattggacattgttctcagcaaggtagaagaaaacctcagc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268216 |
ccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaatgccctcaaattggacattgttctcagcaaggtagaagaaaacctcagc |
27268117 |
T |
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| Q |
282 |
ccaaaccttttgtgctacttcataagttctgtcaataccatgttctccatccagcaagatctctg |
346 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
27268116 |
ccaaaccttttgtgctacttcaaaagttctgtcaatactatgttctccatcaagcaagatctctg |
27268052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 49364671 - 49364732
Alignment:
| Q |
195 |
ctcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattggacattgttct |
256 |
Q |
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|||||| || || |||||||||||||||||||| | ||| |||||||| |||||||||||| |
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| T |
49364671 |
ctcagcaccaggtgtaaccatgctaggcttgagcaaaattccctcaaaaaggacattgttct |
49364732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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