View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9148_low_19 (Length: 343)
Name: NF9148_low_19
Description: NF9148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9148_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 11153802 - 11153978
Alignment:
| Q |
9 |
agaagcagagagaaatgcacctccaaccagagttgctgccatctttttcaaagtggggctgttttgatgaatgttgattaacgaaggcaaggtatatagc |
108 |
Q |
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| T |
11153802 |
agaagcagagagaaatgcacctccaaccaaagttgctgccatctttt-caaagtggggttgttttgatgaatgttgattaacgaaggcaaggtatatagc |
11153900 |
T |
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| Q |
109 |
ttgaaaggtggagcacaaatttggtaaggtacctttatgcaggaaaacttcgttgatacaactaaggagcacaaattat |
187 |
Q |
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| T |
11153901 |
ttgaaaggt-gaaaacaagtttggtaaggtacctttatgcagggaatcttcgtttagactaccaagaagcacaaattat |
11153978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 11131684 - 11132008
Alignment:
| Q |
9 |
agaagcagagagaaatgcacctccaaccagagttgctgccatctttttcaaagtggggctgttttgatgaatgttgattaacgaaggcaaggtatatagc |
108 |
Q |
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| T |
11131684 |
agaagcagagagaaatgcacctccaaccaaagttgctgccatctttt-ctaagcggggttgttttgatgaatgttgattaacgaaggtaaggta----gc |
11131778 |
T |
|
| Q |
109 |
ttgaaa------------ggtggagcacaaatttggtaaggtacctttatgcaggaaaacttcgttgatacaactaaggagcacaaattatagagagttg |
196 |
Q |
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| T |
11131779 |
ttgaaaatctatatcgatgggggaaaacaagtttggtaaggtacctttatacagggaaacttcgttgagattactaaggagcacaaattatagagagttg |
11131878 |
T |
|
| Q |
197 |
gaatatgttcttacattaagcacaatcattataattataaatataataataaagatgtt---gattcctgtaaacgacactgtgtcactgtctaattaaa |
293 |
Q |
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| T |
11131879 |
gaataagttattacattaagcacaatcattataattat-aatagtatagtaaatgtgctaaggaacaaacaaaacgacactgtgtcactgtctatttaag |
11131977 |
T |
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| Q |
294 |
aatttgagaaataaagatgttgattcctgta |
324 |
Q |
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| T |
11131978 |
aatttgagaaataaagatcttgattactgta |
11132008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 10888717 - 10888484
Alignment:
| Q |
9 |
agaagcagagagaaatgcacctccaaccagagttgctgccatctttttcaaagtggggctgttttgatgaatgttgattaacgaaggcaaggta-----t |
103 |
Q |
| |
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| T |
10888717 |
agaagcagagagaaatgcacctccaaccaaagttgctgccatc-ttttctaagcggggttgttttgatgaatgttgattaacgaaggtaaggtagcttga |
10888619 |
T |
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| Q |
104 |
atagct---tgaaaggtggagcacaaatttggtaaggtac--ctttatgcaggaaaacttcgttgatacaactaaggagcacaaattatagagagttgga |
198 |
Q |
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| T |
10888618 |
aaatctatatcaatggtggaaaacaagtttggtaatgtacctctttatgcagggaaacttcgttgagattactatggagcacaaattattgagagttgga |
10888519 |
T |
|
| Q |
199 |
atatgttcttacattaagcacaatcattataatta |
233 |
Q |
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||| ||| ||||||||||||||||||||||||||| |
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| T |
10888518 |
ataagttattacattaagcacaatcattataatta |
10888484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 8860697 - 8860531
Alignment:
| Q |
9 |
agaagcagagagaaatgcacctccaaccagagttgctgccatctttttcaaagtggggctgttttgatgaatgttgattaacgaaggcaaggta-----t |
103 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||| |||||| |
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| T |
8860697 |
agaagcagagagaaatgcacctccaaccaaagttgctgccatc-ttttctaagcggggttgttttgatgaatgttgattaacgaaggtaaggtagcttga |
8860599 |
T |
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| Q |
104 |
atagct---tgaaaggtggagcacaaatttggtaaggtacctttatgcaggaaaacttcgttgataca |
168 |
Q |
| |
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| T |
8860598 |
aaatctatatcaatggtggaaaacaagtttggtaaggtacctttatgcagggaaacttcgttgataca |
8860531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 11149596 - 11149662
Alignment:
| Q |
123 |
acaaatttggtaaggtacctttatgcaggaaaacttcgttgatacaactaaggagcacaaattatag |
189 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11149596 |
acaagtttggtaaggtacctttatgcagggaaacttcgttgatacaactaaggagcacaaattatag |
11149662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 11149512 - 11149562
Alignment:
| Q |
9 |
agaagcagagagaaatgcacctccaaccagagttgctgccatctttttcaa |
59 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
11149512 |
agaagcagagagaaatgcacctccaaccaaagttgcagccatctttctcaa |
11149562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 11162776 - 11162822
Alignment:
| Q |
9 |
agaagcagagagaaatgcacctccaaccagagttgctgccatctttt |
55 |
Q |
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||||||||| ||||||||||||||||||| |||||| |||||||||| |
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| T |
11162776 |
agaagcagatagaaatgcacctccaaccaaagttgcagccatctttt |
11162822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 11160675 - 11160721
Alignment:
| Q |
9 |
agaagcagagagaaatgcacctccaaccagagttgctgccatctttt |
55 |
Q |
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||||||||| ||||||||||||||||||| |||||| || ||||||| |
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| T |
11160675 |
agaagcagatagaaatgcacctccaaccaaagttgcagcaatctttt |
11160721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 31680397 - 31680444
Alignment:
| Q |
9 |
agaagcagagagaaatgcacctccaaccagagttgctgccatcttttt |
56 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||| ||||| ||||| |
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| T |
31680397 |
agaagcagagagaaatgcacctcccaccaaagttgcagccattttttt |
31680444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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