View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9148_low_21 (Length: 327)
Name: NF9148_low_21
Description: NF9148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9148_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 41 - 304
Target Start/End: Complemental strand, 41674207 - 41673946
Alignment:
| Q |
41 |
attattctcaaatgaagctagtaatcgaaacaataaaaaactcaaacattaacnnnnnnnnnnnnnnnnaccaaaaggacaaaaacttcaaacatttttc |
140 |
Q |
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| T |
41674207 |
attattctcaaatgaaaccagtaatcgaaacaataaaaaactcaaacattaactttttttatttttt--accaaaaggacaaaaacttcaaacatttttc |
41674110 |
T |
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| Q |
141 |
taactgacagtgacacataacatgaatcaggattcctaatattcgtttttggggagggattatataatttcatccacattatactgtccttaagtagtaa |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
41674109 |
taactgacagtgacacataacatgaatcaggattcctaatattcgtttttggggagggattatacaatttcatccacattatactgtccttaaatagtaa |
41674010 |
T |
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| Q |
241 |
taattaaactattacaaatacattcccattaatacatgctagtataattataaggaggtctata |
304 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41674009 |
taattaaactattacaaatacattcccattgatacatgctagtataattataaggaggtctata |
41673946 |
T |
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