View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9148_low_25 (Length: 242)
Name: NF9148_low_25
Description: NF9148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9148_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 13478475 - 13478693
Alignment:
| Q |
14 |
gatgaaatcgaaaagtgtgttttaaatagcattattcattgtagtaatttttacacgagagagattaaaatttaatttgtcatcatttaaaagcaaagaa |
113 |
Q |
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| T |
13478475 |
gatgaaagcgaaaagtgtgttttaaatagcattattcatggtagtaatttttacacgagagagattaaaatttaatttgtcatcatttaaaagcaaagaa |
13478574 |
T |
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| Q |
114 |
aattacatagcaagtttatattggtaaacttaaatagaggtaatagtcattttgatcctgaatgtgtaacgagtagcgagtaaaatccttcaatatatca |
213 |
Q |
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| T |
13478575 |
aattacataacaagtttatattggtaaacttaaataggggtaatagtcattttaatcctgaatgtgtaatgagtagtcagtaaaatccttcaatatatca |
13478674 |
T |
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| Q |
214 |
acattttaaaatagtctct |
232 |
Q |
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| T |
13478675 |
acattttaaaacagtctct |
13478693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 14984407 - 14984442
Alignment:
| Q |
154 |
taatagtcattttgatcctgaatgtgtaacgagtag |
189 |
Q |
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| T |
14984407 |
taatagtcattttggtcctgaatgtgtaacgagtag |
14984442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 31903248 - 31903285
Alignment:
| Q |
152 |
ggtaatagtcattttgatcctgaatgtgtaacgagtag |
189 |
Q |
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| T |
31903248 |
ggtaatagtcattttgaccctgaatgtgtaacaagtag |
31903285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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