View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9149_high_5 (Length: 292)
Name: NF9149_high_5
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9149_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 5726983 - 5727115
Alignment:
| Q |
16 |
gaaatattttctagattaaatacatagaatttgactactttttatttgtgtttaggccttacttcttaaaagcttaaagcttaaggttataatttgtgac |
115 |
Q |
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| T |
5726983 |
gaaatattttctagattaaatacatagaatttgactactttttatttgtgtttaggccttacttcttaaaagcttaaagcttaaggttataatttgtgac |
5727082 |
T |
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| Q |
116 |
ttatgaattgtgtgtacgactgtcatcatatgg |
148 |
Q |
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| T |
5727083 |
ttatgaattgtgtgtacgactgtcatcatatgg |
5727115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 5727213 - 5727249
Alignment:
| Q |
246 |
ctcttcatttatgcacaaacgttagcagaaagtatta |
282 |
Q |
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| T |
5727213 |
ctcttcatttatgcacaaacgttagcagaaagtatta |
5727249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 4375877 - 4375758
Alignment:
| Q |
16 |
gaaatattttctagattaaatacatagaatttgactactttttatttgtgtttaggcct---tacttcttaaaagcttaa--------agcttaaggtta |
104 |
Q |
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| T |
4375877 |
gaaagattttctagattaaatacctagaatttgacta----ttattgatgtttatgtcttggtactttttaaaagcttaatactatatagcttaaggttt |
4375782 |
T |
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| Q |
105 |
taatttgtgacttatgaattgtgt |
128 |
Q |
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| T |
4375781 |
taatttgtgacttatgaattgtgt |
4375758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 4364217 - 4364181
Alignment:
| Q |
92 |
aagcttaaggttataatttgtgacttatgaattgtgt |
128 |
Q |
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| T |
4364217 |
aagcttaagtttgtaatttgtgacttatgaattgtgt |
4364181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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