View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9149_low_1 (Length: 1337)
Name: NF9149_low_1
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9149_low_1 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 14 - 722
Target Start/End: Complemental strand, 28148905 - 28148203
Alignment:
| Q |
14 |
attatactatactcaacggagccaccaatcatcacgatcacgatccttacggatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgata |
113 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28148905 |
attatactatgctcaacgtaaccaccaatcatcatgatcacgatccttacgaatggcaaaaaaattaaattcaagaacttcagctccaagctcagtgatg |
28148806 |
T |
|
| Q |
114 |
gctctctttggtctcaatgattccctacagagaggacaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacacc |
213 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28148805 |
gctctctttggtctcaacgattctctgcaaagagggcaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacacc |
28148706 |
T |
|
| Q |
214 |
ttaatgctctaatttcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgtgtttataattaatgcatgt |
313 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28148705 |
ttaatactctaatttcatctccttcttctattttggagagacacacaacacattctacatcttcatctgagcaagatttgtgtttataattaatgcatgt |
28148606 |
T |
|
| Q |
314 |
attgtacatttctccaattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatacccattttaaatgagtgtat |
413 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28148605 |
attgtacatttctccaattattggaaaatgagaacgatggagcttattatagaagggataatatataaggaaatctaatacccattttagatgagtgtaa |
28148506 |
T |
|
| Q |
414 |
actaggcttaagtatttcatgatcatgatgaaagtttgggggtggagaaatggcttggtaggattattggcttaaacttttttgcggttgaatgaagtgg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | ||||||| ||| |||||||||||||||||||||| ||||||| || | ||||||| |
|
|
| T |
28148505 |
actaggcttaagtatttcatgatcatgatgaaggtttggggatagagaaatagctaggtaggattattggcttaaactgttttgcgcttaagagaagtgg |
28148406 |
T |
|
| Q |
514 |
aaatttgtggtgatatttataaactaagctcaagggaagactgaaaagatagattaaatgataaatgaatcatatatagtatggtcaaagagtgacagct |
613 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||| |||| |||||||||||||| | |||||||||| |
|
|
| T |
28148405 |
aaacttgtggtgatatttataaactaagctcaagtgcagactgaaaatatagattaaaagataaataaatc--atatagtatggtcatatagtgacagct |
28148308 |
T |
|
| Q |
614 |
tattttgaaaatgaaaactaatacgtgcttaattttatatttcttgtatgattgatattaattaaaaagcttttgacattttaaattagatctgtatgtt |
713 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
28148307 |
tattttgaaaatgaaaactagtacgtgcttaattttatatttctttt----gtgataataatttaaaaacttttgacattttaaattagatttgtatgtt |
28148212 |
T |
|
| Q |
714 |
ttagactct |
722 |
Q |
| |
|
||||||||| |
|
|
| T |
28148211 |
ttagactct |
28148203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 23 - 489
Target Start/End: Complemental strand, 28153551 - 28153085
Alignment:
| Q |
23 |
tactcaacggagccaccaatcatcacgatcacgatccttacggatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgatagctctcttt |
122 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28153551 |
tactcagcgtagccaccaatcatcacgatcgcgatccttacgaatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgatagctctcttt |
28153452 |
T |
|
| Q |
123 |
ggtctcaatgattccctacagagaggacaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacaccttaatgctc |
222 |
Q |
| |
|
|||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28153451 |
ggtctcaatgattctctgcaaagagggcaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacaccttaatactc |
28153352 |
T |
|
| Q |
223 |
taatttcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgtgtttataattaatgcatgtattgtacat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28153351 |
taatttcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagatgtgtgtttataattaatgcatgtattgtacat |
28153252 |
T |
|
| Q |
323 |
ttctccaattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatacccattttaaatgagtgtatactaggctt |
422 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |
|
|
| T |
28153251 |
ttctccaattattggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaataaccattttagatgagtgtatactagactt |
28153152 |
T |
|
| Q |
423 |
aagtatttcatgatcatgatgaaagtttgggggtggagaaatggcttggtaggattattggcttaaa |
489 |
Q |
| |
|
|||||||||||||||||| | || |||| | ||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
28153151 |
aagtatttcatgatcatgctaaaggtttcgaggtagagaaatagctaggtaggattattggcttaaa |
28153085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 23 - 440
Target Start/End: Complemental strand, 17157618 - 17157207
Alignment:
| Q |
23 |
tactcaacggagccaccaatcatcacgatcacgatccttacggatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgatagctctcttt |
122 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| || ||||| | ||||||||||| ||||| ||||||||||||||||||||| || || | | |
|
|
| T |
17157618 |
tactcaacgtagccaccaatcatcacgatctcgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagctcagtgatggccctttct |
17157519 |
T |
|
| Q |
123 |
ggtctcaatgattccctacagagaggacaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacaccttaatgctc |
222 |
Q |
| |
|
|||||||||||||| || || || |||||||||||||| ||||| | || ||||||||| ||||||| ||| ||||||||||| ||||| || ||| | | |
|
|
| T |
17157518 |
ggtctcaatgattctctgcaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatggtcacatctcaatacac |
17157419 |
T |
|
| Q |
223 |
taatttcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgtgtttataattaatgcatgtattgtacat |
322 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| ||| ||||||| |||||||||| ||||| | |||||||| ||||| ||||| ||| || || |
|
|
| T |
17157418 |
taatctcatctccttcttctattttgcagagacacacagcacattcaacatcttcatttgagccatgggtgtgttcataat---tgcatatatcatatat |
17157322 |
T |
|
| Q |
323 |
ttctccaattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatacccattttaaatgagtgtatactaggctt |
422 |
Q |
| |
|
||||||||||| |||||||| ||||| ||| ||| || ||||||||||||||| |||| | ||||||||||||||||| ||||||||| ||||| || |
|
|
| T |
17157321 |
ttctccaattattggaaaattagaatcatgaagc---ttgtagaagggataatatgtaagaatatctaatacccattttatatgagtgtaaactagagtt |
17157225 |
T |
|
| Q |
423 |
aagtatttcatgatcatg |
440 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
17157224 |
aagtacttcatgatcatg |
17157207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 25 - 442
Target Start/End: Complemental strand, 17164582 - 17164171
Alignment:
| Q |
25 |
ctcaacggagccaccaatcatcacgatcacgatccttacggatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgatagctctctttgg |
124 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||||| || || | ||| |
|
|
| T |
17164582 |
ctcaacgtagccaaaaatcatcacgatctcgatcattacggatgacacaaaaattaaatgaaagaatttcagctccaagctcagtgatggccctttctgg |
17164483 |
T |
|
| Q |
125 |
tctcaatgattccctacagagaggacaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacaccttaatgctcta |
224 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||| ||||| |||| ||||||||| ||||||| ||| || |||||||| ||||| || ||| | ||| |
|
|
| T |
17164482 |
tctcaatgattctctacaaaggggacaagtgtggttcttgaaaccaatccatttatctaaacaatatttgtggtacatatggtcacatctcaatacacta |
17164383 |
T |
|
| Q |
225 |
atttcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgtgtttataattaatgcatgtattgtacattt |
324 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| || ||||||| |||||||||| ||||| | | |||||| ||||| ||||| | | ||||||| |
|
|
| T |
17164382 |
atctcatctccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataat---tgcatatgtcatacattt |
17164286 |
T |
|
| Q |
325 |
ctccaattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatacccattttaaatgagtgtatactaggcttaa |
424 |
Q |
| |
|
|||||| || |||||||| ||||| ||| ||| || ||||||||||||||| |||| | ||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
17164285 |
ctccaaatattggaaaattagaatcatgaagc---ttgtagaagggataatatgtaagaatatctaatacccattttagatgagtatatactatagttaa |
17164189 |
T |
|
| Q |
425 |
gtatttcatgatcatgat |
442 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17164188 |
atatttcatgatcatgat |
17164171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 23 - 445
Target Start/End: Complemental strand, 17161540 - 17161124
Alignment:
| Q |
23 |
tactcaacggagccaccaatcatcacgatcacgatccttacggatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgatagctctcttt |
122 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| || ||||| | ||||||||||| ||||| ||||||||||||||||||||| || || | | |
|
|
| T |
17161540 |
tactcaacgcagccaccaatcatcacgatctcgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagctcagtgatggccctttct |
17161441 |
T |
|
| Q |
123 |
ggtctcaatgattccctacagagaggacaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacaccttaatgctc |
222 |
Q |
| |
|
|||||||||||||| || || || |||||||||||||| ||||| | || ||||||||| ||||||| ||| ||||||||||| ||||| || ||| | | |
|
|
| T |
17161440 |
ggtctcaatgattctctgcaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatggtcacatctcaatacac |
17161341 |
T |
|
| Q |
223 |
taatttcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgtgtttataattaatgcatgtattgtacat |
322 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| || ||||||| |||||||||| ||||| | | |||||| ||||| ||||| | | ||||| |
|
|
| T |
17161340 |
taatctcatctccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataat---tgcatatgtcatacat |
17161244 |
T |
|
| Q |
323 |
ttctccaattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatacccattttaaatgagtgtatactaggctt |
422 |
Q |
| |
|
|||||||| || |||||||| |||| ||| ||| || ||||||||||||||| |||| | ||||||||||||||||| ||||||||| |||| || |
|
|
| T |
17161243 |
ttctccaaatattggaaaattagaaccatgaagc---ttgtagaagggataatatgtaagaatatctaatacccattttatatgagtgtaaactatagtt |
17161147 |
T |
|
| Q |
423 |
aagtatttcatgatcatgatgaa |
445 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
17161146 |
aagtatttcatgatcatggtgaa |
17161124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 73 - 445
Target Start/End: Original strand, 26399235 - 26399601
Alignment:
| Q |
73 |
aaaaattaaattcaagaacttcagctccaagctcagtgatagctctctttggtctcaatgattccctacagagaggacaagtgtggtttttgaatccaac |
172 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||||| || || || |||||||||||| || || || |||||||||| ||| ||||| ||||| |
|
|
| T |
26399235 |
aaaaattaaatgaaagaacatcaactccaagctcagtgatggcccttcctgatctcaatgattctctgcaaagtggacaagtgttgttcttgaaaccaac |
26399334 |
T |
|
| Q |
173 |
ccatttatccaaacaatttttatgatacatatgatcacaccttaatgctctaatttcatctccttcttctattttggagagacatacaacacattctaca |
272 |
Q |
| |
|
|||| |||||||||||| | ||||| |||||||||||||||| ||| ||||||| |||||||||||||||||||| | ||||| ||| |||||||||| |
|
|
| T |
26399335 |
ccatctatccaaacaatatctatgaaacatatgatcacacctcaatactctaatctcatctccttcttctattttacatagacacacagaacattctaca |
26399434 |
T |
|
| Q |
273 |
tcttcatctgagcaagaggtgtgtttataattaatgcatgtattgtacatttctccaattaatggaaaatgagaatgatggagcttattatagaagggat |
372 |
Q |
| |
|
||||| |||||| |||| || ||| ||||| ||||| || | ||||||||| |||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
26399435 |
tcttcctctgagtcagagatgggttcataat---tgcatatactatacatttcttcaattattggaaaatgagaatcatggagc---ttatagaagggat |
26399528 |
T |
|
| Q |
373 |
aatatataaggaaatctaatacccattttaaatgagtgtatactaggcttaagtatttcatgatcatgatgaa |
445 |
Q |
| |
|
||||| ||||||||| |||||||||||||| | |||||||||||| | |||| ||| ||||||||| |||| |
|
|
| T |
26399529 |
aatatgtaaggaaatttaatacccattttaggtaagtgtatactagagtgaagtgtttaatgatcatgctgaa |
26399601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 889 - 1041
Target Start/End: Complemental strand, 28147978 - 28147815
Alignment:
| Q |
889 |
acaacatggcatactaaaaatagaaaaataattgtcaacaaacacttgccatgtttc-----------tcatgaaatataaaaatgtactctattgtcac |
977 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| ||||| | | ||| ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
28147978 |
acaacatagtatactaaaaatagaaaaataattgtcagcaaacccctaccacgtttctttttgagaaattatgaaatataaaaatgtactctattgtcac |
28147879 |
T |
|
| Q |
978 |
gtttcttaattatgttgagtgtttacaatacaatatttgtcttgtataaaagcacagcagtact |
1041 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
28147878 |
gtttcttaattatgttgattgtttacaatacaatatatatcttgtataaaagcacagcagtact |
28147815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 1230 - 1322
Target Start/End: Complemental strand, 28147652 - 28147560
Alignment:
| Q |
1230 |
tgagaattcactagtgcataaataagattttatagtgaatattttagactagttcattacacaagtgatgtaaaacaatgatggtaattttga |
1322 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28147652 |
tgagaattcactagtgtataaataagattttactgtggatcttttagactaattcattacacaagtgatgtaaaacaatgatggtaattttga |
28147560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1230 - 1321
Target Start/End: Complemental strand, 28151691 - 28151600
Alignment:
| Q |
1230 |
tgagaattcactagtgcataaataagattttatagtgaatattttagactagttcattacacaagtgatgtaaaacaatgatggtaattttg |
1321 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||| || ||||| ||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
28151691 |
tgagaattcactagtgcagaaataagattttattgtggatcttttacactagttcattacacaattgatgtaaaacaatgatgctaattttg |
28151600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 946 - 1069
Target Start/End: Complemental strand, 28151904 - 28151779
Alignment:
| Q |
946 |
tcatgaaatataaaaatgtactctatt-gtcacgtttcttaattatgttgagtgtttacaatacaatatttgtcttgt---ataaaagcacagcagtac- |
1040 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
28151904 |
tcatgaaatataaaactgtactctatttgtcacgtttctta----tgttgagtgttta-aatacaatatttgtcttgtataataaaagcatagcagtacc |
28151810 |
T |
|
| Q |
1041 |
--tcacagtcattagtgtttcttgagtcaga |
1069 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
28151809 |
attcacagtcaccagtgtttcttgagtcaga |
28151779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1097 - 1217
Target Start/End: Complemental strand, 28147802 - 28147685
Alignment:
| Q |
1097 |
actaatatttccagatatttattc-agtttttaccaatcatatcattgtcttgtctctcttgttaggatgacgaggacctctaacttttacttcctgtaa |
1195 |
Q |
| |
|
|||| |||| |||||| |||||| ||||||||||||| |||||||||||| |||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
28147802 |
actagtattcccagatttttattttagtttttaccaattatatcattgtctac-----cttgttaggaagacgaggaccgttaacttttacttccggtaa |
28147708 |
T |
|
| Q |
1196 |
atattgcgagt-cattaaagaag |
1217 |
Q |
| |
|
|||| | |||| ||||||||||| |
|
|
| T |
28147707 |
atatcgtgagtccattaaagaag |
28147685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 3e-73
Query Start/End: Original strand, 122 - 418
Target Start/End: Complemental strand, 19317558 - 19317268
Alignment:
| Q |
122 |
tggtctcaatgattccctacagagaggacaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacaccttaatgct |
221 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| | ||| || |
|
|
| T |
19317558 |
tggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatgatacatatgatcacacttcaatact |
19317459 |
T |
|
| Q |
222 |
ctaatttcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgtgtttataattaatgcatgtattgtaca |
321 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||| || | || || ||||| ||||| |||| |||| |
|
|
| T |
19317458 |
ctaatatcatctccttcttctattttgcatagacacacaacacattctacatctttctctgagtcagggatggattcataat---tgcatatattataca |
19317362 |
T |
|
| Q |
322 |
tttctccaattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatacccattttaaatgagtgtatactag |
418 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| |||||||| ||||||||| |||| ||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
19317361 |
tttctccaattattggaaaatgagaatcatggagc---ttatagaatggataatatgtaagaaaatctattgcccattttagatgagtgtatactag |
19317268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 7e-71; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 7e-71
Query Start/End: Original strand, 24 - 440
Target Start/End: Original strand, 25228891 - 25229292
Alignment:
| Q |
24 |
actcaacggagccaccaatcatcacgatcacgatccttacggatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgatagctctctttg |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||| ||||| |||||| |||| ||||||||| ||||| |||||||||| ||||| | || |
|
|
| T |
25228891 |
actcaacgtagccaccaatcatcacgatctcgatcactacgaatggcacaaaaatcaaatgaaagaacttctactccatgctcagtgatggctctttctg |
25228990 |
T |
|
| Q |
124 |
gtctcaatgattccctacagagaggacaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacaccttaatgctct |
223 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||| ||||| | || ||||||||| ||||||| ||| ||||||||||||||||| || ||| | || |
|
|
| T |
25228991 |
gtctcaatgattctctacaaagaggacaagtatggttcttgaaactaagccatttatctaaacaatgtttgtgatacatatgatcacatctcaatacact |
25229090 |
T |
|
| Q |
224 |
aatttcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgtgtttataattaatgcatgtattgtacatt |
323 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||||| ||||| || || ||| ||||||| |
|
|
| T |
25229091 |
aatctcatctccttcttctattttgcagagacacacaacacattccacatcttcat---------tggtgtgttcataat---tgtatatatcgtacatt |
25229178 |
T |
|
| Q |
324 |
tctccaattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatacccattttaaatgagtgtatactaggctta |
423 |
Q |
| |
|
||||| |||| |||||||| ||||| ||| || |||||||||||||||||| |||| | ||||||||||||||||| ||||||||| | || ||| |
|
|
| T |
25229179 |
tctcctattattggaaaattagaatcatgaag---tttatagaagggataatatgtaagaatatctaatacccattttagatgagtgtaaaatatagtta |
25229275 |
T |
|
| Q |
424 |
agtatttcatgatcatg |
440 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
25229276 |
agtagttcatgatcatg |
25229292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 28 - 440
Target Start/End: Original strand, 25217082 - 25217479
Alignment:
| Q |
28 |
aacggagccaccaatcatcacgatcacgatccttacggatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgatagctctctttggtct |
127 |
Q |
| |
|
|||| |||||||||||||||||||| | ||| |||||||||| |||||| |||| ||||||||| ||||| |||||||||| ||||| | |||||| |
|
|
| T |
25217082 |
aacgtagccaccaatcatcacgatctctatcactacggatggcacaaaaatcaaatgaaagaacttctactccatgctcagtgatggctctttctggtct |
25217181 |
T |
|
| Q |
128 |
caatgattccctacagagaggacaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacaccttaatgctctaatt |
227 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| ||||| | || ||||||||| ||||||| ||| ||||||||||||||||| || ||| | ||||| |
|
|
| T |
25217182 |
caatgattctctacaaagaggacaagtatggttcttgaaactaagccatttatctaaacaatgtttgtgatacatatgatcacatctcaatacactaatc |
25217281 |
T |
|
| Q |
228 |
tcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgtgtttataattaatgcatgtattgtacatttctc |
327 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||||| ||||| || || ||| ||||||||||| |
|
|
| T |
25217282 |
tcatctccttcttctattttgcagagacacacaacacattccacatcttcat---------tggtgtgttcataat---tgtatatatcgtacatttctc |
25217369 |
T |
|
| Q |
328 |
caattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatacccattttaaatgagtgtatactaggcttaagta |
427 |
Q |
| |
|
| |||| |||||||| ||||| ||| || |||||||||||||||||| |||| | ||||||||||||||||| ||||||||| | || ||||||| |
|
|
| T |
25217370 |
ctattattggaaaattagaatcatgaag---tttatagaagggataatatgtaagaatatctaatacccattttagatgagtgtaaaatatagttaagta |
25217466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 28 - 440
Target Start/End: Original strand, 25233622 - 25234019
Alignment:
| Q |
28 |
aacggagccaccaatcatcacgatcacgatccttacggatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgatagctctctttggtct |
127 |
Q |
| |
|
|||| |||||||||||||||||||| | ||| |||||||||| |||||| |||| ||||||||| ||||| |||||||||| ||||| | |||||| |
|
|
| T |
25233622 |
aacgtagccaccaatcatcacgatctctatcactacggatggcacaaaaatcaaatgaaagaacttctactccatgctcagtgatggctctttctggtct |
25233721 |
T |
|
| Q |
128 |
caatgattccctacagagaggacaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatgatcacaccttaatgctctaatt |
227 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| ||||| | || ||||||||| ||||||| ||| ||||||||||||||||| || ||| | ||||| |
|
|
| T |
25233722 |
caatgattctctacaaagaggacaagtatggttcttgaaactaagccatttatctaaacaatgtttgtgatacatatgatcacatctcaatacactaatc |
25233821 |
T |
|
| Q |
228 |
tcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgtgtttataattaatgcatgtattgtacatttctc |
327 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||||| ||||| || || ||| ||||||||||| |
|
|
| T |
25233822 |
tcatctccttcttctattttgcagagacacacaacacattccacatcttcat---------tggtgtgttcataat---tgtatatatcgtacatttctc |
25233909 |
T |
|
| Q |
328 |
caattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatacccattttaaatgagtgtatactaggcttaagta |
427 |
Q |
| |
|
| |||| |||||||| ||||| ||| || |||||||||||||||||| |||| | ||||||||||||||||| ||||||||| | || ||||||| |
|
|
| T |
25233910 |
ctattattggaaaattagaatcatgaag---tttatagaagggataatatgtaagaatatctaatacccattttagatgagtgtaaaatatagttaagta |
25234006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 195 - 440
Target Start/End: Original strand, 25225741 - 25225971
Alignment:
| Q |
195 |
tgatacatatgatcacaccttaatgctctaatttcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagaggtgt |
294 |
Q |
| |
|
||||||||||||||||| || ||| | ||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
25225741 |
tgatacatatgatcacatctcaatacactaatctcatctccttcttctattttgcagagacacacaacacattccacatcttcat---------tggtgt |
25225831 |
T |
|
| Q |
295 |
gtttataattaatgcatgtattgtacatttctccaattaatggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaatac |
394 |
Q |
| |
|
||| ||||| || || ||| |||||||||||| |||| |||||||| ||||| ||| || |||||||||||||||||| |||| | ||||||||| |
|
|
| T |
25225832 |
gttcataat---tgtatatatcgtacatttctcctattattggaaaattagaatcatgaag---tttatagaagggataatatgtaagaatatctaatac |
25225925 |
T |
|
| Q |
395 |
ccattttaaatgagtgtatactaggcttaagtatttcatgatcatg |
440 |
Q |
| |
|
|||||||| ||||||||| | || ||||||| |||||||||||| |
|
|
| T |
25225926 |
ccattttagatgagtgtaaaatatagttaagtagttcatgatcatg |
25225971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 25231032 - 25231112
Alignment:
| Q |
360 |
ttatagaagggataatatataaggaaatctaatacccattttaaatgagtgtatactaggcttaagtatttcatgatcatg |
440 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||||||||| ||||||||| | || ||||||| |||||||||||| |
|
|
| T |
25231032 |
ttatagaagggataatatgtaagaatatctaatacccattttagatgagtgtaaaatatagttaagtagttcatgatcatg |
25231112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 133302 - 133242
Alignment:
| Q |
380 |
aaggaaatctaatacccattttaaatgagtgtatactaggcttaagtatttcatgatcatg |
440 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||| | || ||||||||||||||| |
|
|
| T |
133302 |
aaggaaatctaacacccattttaaatgagagtaaactagagtaaaatatttcatgatcatg |
133242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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