View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9149_low_10 (Length: 551)
Name: NF9149_low_10
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9149_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 38568533 - 38569072
Alignment:
| Q |
1 |
cacatgggttagatttcaaggaaacaagtgctcctg---------------ccataaaagttgtccttaccattgcccttgcctctggatggtctttcca |
85 |
Q |
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| T |
38568533 |
cacatgggttagatttcaaggaaacaagtgctcctgtcgttaaacctcaaaccataaaagttgtccttaccattgcccttgcctctggatggtctttcca |
38568632 |
T |
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| Q |
86 |
tcaactagatgtcaataatgtcttcttgcaaggttaaataagtgaagaggtttacatgcaacaaccacctggttttatccatgctgattttcctagtcac |
185 |
Q |
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| T |
38568633 |
tcaactagatgtcaataatgtcttcttgcaaggttaaataagtgaagaggtttacatgcaacaaccatctggttttatccatgctgattttcctagtcac |
38568732 |
T |
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| Q |
186 |
atttgcaaattaaagaaagcaacgtatggtccaagcagctcgtgcatggcatgatgcactcaaagaattgtactatcatatggctttacaatgagtttga |
285 |
Q |
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| T |
38568733 |
atttgcaaattaaagaaagcaacgtatggtccaagcagctcttgcatggcatgatgcactcaaagaattgtactatcatatggctttacaatgagtttga |
38568832 |
T |
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| Q |
286 |
gtgattcttccttgttcatctacaaaaaagaaggaatacaagctttcttgctagtatatgttgatgacttgattctcacaggaagtgttccaataattct |
385 |
Q |
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| T |
38568833 |
gtgattcttccttgttcatctacaaaaaagaaggaatacaagctttcttgctagtatatgttgatgacttgattctcacaggaagtgttccaataattct |
38568932 |
T |
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| Q |
386 |
caaatcatttatgaaggaactgtcaaatcaattttcaatcaagtatcttggttatccacattacttccttggtgttgaacttatccctacctctgatggt |
485 |
Q |
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| T |
38568933 |
caaatcatttatgaagaaactgtcaaatcaattttcaatcaagtatcttggttatccacattacttccttggtgttgaacttatccctacctctgatggt |
38569032 |
T |
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| Q |
486 |
ttgattctcgctcaacatggacatatcagaaactttttac |
525 |
Q |
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| T |
38569033 |
ttgattctcgctcaacatggacatatcagaaactttttac |
38569072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 31346838 - 31346905
Alignment:
| Q |
285 |
agtgattcttccttgttcatctacaaaaaagaaggaatacaagctttcttgctagtatatgttgatga |
352 |
Q |
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| T |
31346838 |
agtgattcctccttgttcatctacaatagagaaggggtgcaagcattcttgctagtttatgttgatga |
31346905 |
T |
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