View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9149_low_12 (Length: 353)
Name: NF9149_low_12
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9149_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 25601621 - 25601918
Alignment:
| Q |
21 |
atgatgatggttggttctgtctccaactccaattccattacactaggagtgagagttgcttcattcacaactccaaatgctaaatcaacaagaggacttt |
120 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25601621 |
atgatgatggttggtgctgtctccaacttcaattccattacactaggagtgagagttgcttcattcacaactccaaatgctaaatcaa---gaggacttt |
25601717 |
T |
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| Q |
121 |
ctttttatctgcctctgtctccatggagaagaaggtaccaaattacttcacatatttattttactattccttgcttgatgtagtttgagaatcatatttc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||| || |||||||||||||||||||| |
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| T |
25601718 |
ctttttatctgcctctgtctccatggagaagaaggtaccaaattacttcaca-attca----------cattgattt---tagtttgagaatcatatttc |
25601803 |
T |
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| Q |
221 |
acttatgtttttgtttgcagcttagatattctctctacttccaatggaacaactctcagacatctcaatactccaatttcagctgttaattcaggttcct |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25601804 |
acttatgtttttgtttgcagcttagatattctctctacttccaatggaacaactctcagacatctcaatactccaatttcagctgttaattcaggttcct |
25601903 |
T |
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