View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9149_low_16 (Length: 305)
Name: NF9149_low_16
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9149_low_16 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 3605116 - 3604812
Alignment:
| Q |
1 |
gctagatgaaatagcaaggactacatctgcaacttcaaatgaaatgtcagttctgaagctcgttacatgtgaccaaccagccataacttcgcaggagggg |
100 |
Q |
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| T |
3605116 |
gctagatgaaatagcaaggactacatctgcaacttcaaatgaaatgtcagttctgaagctcgttacatgtgaccaaccagccataacttcgcaggagggg |
3605017 |
T |
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| Q |
101 |
gacaatgtatcactcgctagccaacatccttttttatgttttcaataagaatcgatgttcgaatgttaacaaggactttgaaatcattcaacaagctcta |
200 |
Q |
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| T |
3605016 |
gacaatgtgtcactcgctagccaacatccttttttatgttttcaataagaatcgatgttcgaatgttaacaaggactttgaaatcattcaacaagctcta |
3604917 |
T |
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| Q |
201 |
acagacaccagcaacaacatagaagcacccttcattacgtatttatcgaagtcgcnnnnnnngaaggcaagtcgttcagtaattaaaacccggtttcagg |
300 |
Q |
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| T |
3604916 |
tcagataccagcagcaacacagaagcacccttcattacgtatttatcgaagtcgcaaaaaaagaagtcaagtcgttaagtaattaaatcccggtttcaag |
3604817 |
T |
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| Q |
301 |
gtcct |
305 |
Q |
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||||| |
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| T |
3604816 |
gtcct |
3604812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 55990344 - 55990194
Alignment:
| Q |
156 |
tgttcgaatgttaacaaggactttgaaatcattcaacaagctctaacagacaccagcaacaacatagaagcacccttcattacgtatttatcgaagtcgc |
255 |
Q |
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| T |
55990344 |
tgttcgaatgtgaacaaggacttagagatcattaagcaaactctaacagacaccagcagcaacccagaagcacccttcattatgtatttatcgaagtcgc |
55990245 |
T |
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| Q |
256 |
-nnnnnnngaaggcaagtcgttcagtaattaaaacccggtttcagggtcct |
305 |
Q |
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| T |
55990244 |
aaaaaaaagaaggcaagtcgctcaataattaaaacccggtctcagggtcct |
55990194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 18100397 - 18100314
Alignment:
| Q |
122 |
caacatccttttttatgttttcaataagaatcgatgttcgaatgttaacaaggactttgaaatcattcaacaagctctaacagac |
206 |
Q |
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| T |
18100397 |
caacatcctgtttt-tatttttaataagcatcgttgtccgattgttaacaaaaacttagatatcattcaacaagctttaacagac |
18100314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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