View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9149_low_19 (Length: 255)
Name: NF9149_low_19
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9149_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41597932 - 41597696
Alignment:
| Q |
1 |
aaaacttggtaagctttcaagaaatcagcagcactaaacatcttttggctcatatataatatttgtgtaccggtaccagcaccaaccatgcgcgcttcaa |
100 |
Q |
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| T |
41597932 |
aaaacttggtaagctttcaagaaatcagcagcactaaacatcttttggctcatatataatatttgtgtaccggtaccagcaccaaccatgcgcgcttcaa |
41597833 |
T |
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| Q |
101 |
tcgcattcgcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattagcagtcctattgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41597832 |
tcgcattcgcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattagcagtcctattgtc |
41597733 |
T |
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| Q |
201 |
attagcagatacagcttgtgcactcagaaccaaaagg |
237 |
Q |
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| T |
41597732 |
attagcagatacagcttgtgcacacagaaccaaaagg |
41597696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 39576225 - 39576168
Alignment:
| Q |
180 |
ttcattagcagtcctattgtcattagcagatacagcttgtgcactcagaaccaaaagg |
237 |
Q |
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| T |
39576225 |
ttcattagcaatcctattgtcattagcagacacagcttgtgcacacataaccaaaagg |
39576168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 23904611 - 23904495
Alignment:
| Q |
104 |
cattcgcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattagcagtcctattgtcatt |
203 |
Q |
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| T |
23904611 |
cattggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttctattgtcatt |
23904512 |
T |
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| Q |
204 |
agcagatacagcttgtg |
220 |
Q |
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||| | | |||||||| |
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| T |
23904511 |
ggcatacatagcttgtg |
23904495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 23912358 - 23912474
Alignment:
| Q |
104 |
cattcgcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattagcagtcctattgtcatt |
203 |
Q |
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|||| |||||||||||||||| || |||| | |||| || || || |||||||| | |||||||||||||| | ||||||||| |||| |||||||| |
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| T |
23912358 |
cattggcaaagtaatgagccaacctttgtggtccatccccagagggtgaagaatgttgcctaatctgcttcagtagctcattagcattcctgttgtcatt |
23912457 |
T |
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| Q |
204 |
agcagatacagcttgtg |
220 |
Q |
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||| | |||| ||||| |
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| T |
23912458 |
ggcatacacagattgtg |
23912474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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