View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9149_low_6 (Length: 641)
Name: NF9149_low_6
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9149_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 21 - 625
Target Start/End: Complemental strand, 31010067 - 31009463
Alignment:
| Q |
21 |
aagacctaattgaaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaaaagcaaagtaacctaaagtagca |
120 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010067 |
aagacctaattgtaccaaagcagtaatcattccttgccctagatttgtagtaataatcccttgagttgcttcaccaaaagcaaagtaacctaaagtagca |
31009968 |
T |
|
| Q |
121 |
aaacctccatacaacagaaaaattagaaacattcccaaacccaaaactccaccaaatttatctttatcttttgcttctgattccaaaggcaaaaccattc |
220 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009967 |
aaacctccatacaatagaaaaattaggaacattcccaaacccaaaactccaccaaatttatctttatcttttgcttctgattccaaaggcaaaaccattc |
31009868 |
T |
|
| Q |
221 |
ctattccttcaaaagaataaacagccacacctaaaccatatnnnnnnncagataaaccaccaaaagtcttcaaaggtggcctattttccaaaaagacaaa |
320 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009867 |
ctattccttcaaaagaataaacagccacacctaaaccatatagaaaaacagataaaccaccaaaagtcttcaaaggtggcctattttccaaaaagacaaa |
31009768 |
T |
|
| Q |
321 |
aacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagccaaatgtgtcaaacttggaattgcattcaaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009767 |
aacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagccaaatgtgtcaaacttggaattgcattcaaa |
31009668 |
T |
|
| Q |
421 |
cccaattgaaaagggaaacaagcccaaatnnnnnnnncctttggtgaaaaacccaataaagatgatgagtttgtattatgactaagatgtatcaaagtag |
520 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31009667 |
cccaattgaaaagggaaacaagcccaaataaaaaaaacctttggtgaaaaacccaataaagatgatgagtttgtattgtgactaagatgtatcaaagtag |
31009568 |
T |
|
| Q |
521 |
tggaaataaaaataaggtagctaacacaaaaaccacattgcataagaaaaaccataatatcaacgcacaatcttccaaaatggccacttgttgcatagcc |
620 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009567 |
tggaaataaaaataaggtagctaacacaaaaaccacattgcataagaaaaaccatgatatcaacgcacaatcttccaaaatggccacttgttgcatagcc |
31009468 |
T |
|
| Q |
621 |
taaat |
625 |
Q |
| |
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||||| |
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| T |
31009467 |
taaat |
31009463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 448
Target Start/End: Original strand, 9782794 - 9783041
Alignment:
| Q |
201 |
ttccaaaggcaaaaccattcctattccttcaaaagaataaacagccacacctaaaccatatnnnnnnncagataaaccaccaaaagtcttcaaaggtggc |
300 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| ||||||||| ||||| | |||||| || ||||| ||||| | |||| ||| |
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| T |
9782794 |
ttccaaaggcaaaaccattccaatcccttcaaaagcataaacagctacaccaataccatagaaaaaaacaccaaaacccttaaaagcttccaaatttggt |
9782893 |
T |
|
| Q |
301 |
ctattttccaaaaagacaaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagccaaatgtgtca |
400 |
Q |
| |
|
||||||| || || ||||||||||| |||||||| ||||| | | |||| || |||||||||||||||||| ||||||||||| || ||||| |||| |
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|
| T |
9782894 |
ctattttgcatgaaaacaaaaacatcttcaaccataacaacactcttagcagaaatatcaacaacatcagcaaaaatactcaaaggggctaaatgggtca |
9782993 |
T |
|
| Q |
401 |
aacttggaattgcattcaaacccaattgaaaagggaaacaagcccaaa |
448 |
Q |
| |
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|| || || | |||||| || |||||||| || |||||| |||||| |
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|
| T |
9782994 |
aagttttgatcgaattcaaccctaattgaaatggaaaacaaccccaaa |
9783041 |
T |
|
Back To:
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