View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9149_low_7 (Length: 582)

Name: NF9149_low_7
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9149_low_7
NF9149_low_7
[»] chr2 (6 HSPs)
chr2 (16-363)||(32489203-32489552)
chr2 (436-566)||(32489002-32489132)
chr2 (303-363)||(44883049-44883109)
chr2 (137-209)||(14699313-14699387)
chr2 (140-215)||(12747225-12747302)
chr2 (438-531)||(32176940-32177034)
[»] chr5 (1 HSPs)
chr5 (135-231)||(26206569-26206667)
[»] chr1 (1 HSPs)
chr1 (289-354)||(41341689-41341754)
[»] chr6 (1 HSPs)
chr6 (291-353)||(11527092-11527151)
[»] chr4 (1 HSPs)
chr4 (297-344)||(42877865-42877912)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 32489552 - 32489203
Alignment:
Q  16 tgtggtgctatgaaagcaatagaaactgcatttgnnnnnnnn-ggttaa-tctttagctagagtcagattcagcgttagttgtgcaagcattcaagtcta 113  Q
    ||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32489552 tgtggtgctatgaaagcaatagaaactgcatttgaaaaaaaaaggttaaatctttagctagagtcagattcagcgttagttgtgcaagcattcaagtcta 32489453  T
Q  114 ctaacttaatttcttggcaagttagaaatatgaattgtatagttactcatatataaggaaggaaaccaggtaacagatttccttgcaaactttggtctat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32489452 ctaacttaatttcttggcaagttagaaatatgaattgtatagttactcatatataaggaaggaaaccaggtaacagatttccttgcaaactttggtctat 32489353  T
Q  214 ctttaaaatcttatgtttactggcctaatatatctttatttgcaagggaaacttatgtcaagagcacaattgttatacctaattttaggttttcttcttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32489352 ctttaaaatcttatgtttactggcctaatatatctttatttgcaagggaaacttatgtcaagagcacaattgttatacctaattttaggttttcttcttc 32489253  T
Q  314 ttgagggagttttggtttggtcccctccctcatttttgtacttaatctcc 363  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32489252 ttgagggagttttggtttggttccctccctcatttttgtacttaatctcc 32489203  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 436 - 566
Target Start/End: Complemental strand, 32489132 - 32489002
Alignment:
Q  436 tagataaaaagatcaaaagttaagtctgatgtccatcatgtcaaaacagacttggattaaaaaatagagatagagatattgtcataccatgttcagcagt 535  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32489132 tagataaagagatcaaaagttaagtctgatgtccatcatgtcaaaacagacttggattaaaaaatagagatagagatattgtcataccatgttcagcagt 32489033  T
Q  536 gtatatgtattgatttacatatggatgtatt 566  Q
    |||||||||||||||||||||||||||||||    
T  32489032 gtatatgtattgatttacatatggatgtatt 32489002  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 44883049 - 44883109
Alignment:
Q  303 ttttcttcttcttgagggagttttggtttggtcccctccctcatttttgtacttaatctcc 363  Q
    ||||| ||||||||||||| | |||||||||||||||||||| ||||||||| || |||||    
T  44883049 ttttcatcttcttgagggaatcttggtttggtcccctccctcttttttgtacctattctcc 44883109  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 14699313 - 14699387
Alignment:
Q  137 agaaatatgaattgtatagttactcata--tataaggaaggaaaccaggtaacagatttccttgcaaactttggt 209  Q
    |||||||||||||||||||||||| |||  |||| |||||| || || ||| |||||| ||||||||||||||||    
T  14699313 agaaatatgaattgtatagttacttatatctatagggaagggaatcaagtagcagattcccttgcaaactttggt 14699387  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 12747225 - 12747302
Alignment:
Q  140 aatatgaattgtatagttactcatatat--aaggaaggaaaccaggtaacagatttccttgcaaactttggtctatct 215  Q
    |||||| |||||||||| ||||| || |  |||||||||||||| ||| | |||| ||||||||||||||| ||||||    
T  12747225 aatatgcattgtatagtcactcacattttcaaggaaggaaaccaagtagctgattcccttgcaaactttgggctatct 12747302  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 531
Target Start/End: Complemental strand, 32177034 - 32176940
Alignment:
Q  438 gataaaaagatcaaaagttaagtctgatgtccatcatgtcaaaacagacttg-gattaaaaaatagagatagagatattgtcataccatgttcag 531  Q
    |||||| |||| ||||||||| |||| |||| ||  ||| ||||||||||||  |  |||||||| |||||||||| |||||||| |||||||||    
T  32177034 gataaagagatgaaaagttaaatctggtgtctatgttgttaaaacagacttgaaaaaaaaaaatatagatagagatgttgtcatatcatgttcag 32176940  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 26206569 - 26206667
Alignment:
Q  135 ttagaaatatgaattgtatagttactca--tatataaggaaggaaaccaggtaacagatttccttgcaaactttggtctatctttaaaatcttatgttt 231  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||| |||||| |||||| |||||||||||||||| || | ||||| || |||||||    
T  26206569 ttagaaacatgaattgtatagttactcacatatataaggaaggaaatcaggtagcagattcccttgcaaactttggtttaaccttaaactcctatgttt 26206667  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 41341689 - 41341754
Alignment:
Q  289 tacctaattttaggttttcttcttcttgagggagttttggtttggtcccctccctcatttttgtac 354  Q
    ||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||  ||||||||    
T  41341689 tacctaattataagttttctgcttcttgagggagttttgctttggtcccctccctctattttgtac 41341754  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 11527092 - 11527151
Alignment:
Q  291 cctaattttaggttttcttcttcttgagggagttttggtttggtcccctccctcatttttgta 353  Q
    |||||||||||||| ||||| ||   |||||||||||||||||||||||||||  ||||||||    
T  11527092 cctaattttaggttctcttcatc---agggagttttggtttggtcccctcccttctttttgta 11527151  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 42877865 - 42877912
Alignment:
Q  297 tttaggttttcttcttcttgagggagttttggtttggtcccctccctc 344  Q
    |||||||||||||||   | ||||||||||||||||||||||||||||    
T  42877865 tttaggttttcttctcactaagggagttttggtttggtcccctccctc 42877912  T

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