View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9149_low_8 (Length: 566)
Name: NF9149_low_8
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9149_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 170 - 549
Target Start/End: Complemental strand, 40802563 - 40802189
Alignment:
| Q |
170 |
aaagttatcagataaatgtaccttacactatttgtaggggttgagatttaaatctcagattctttacttccttatatttaaaatgtgtaaatcaaatcta |
269 |
Q |
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| T |
40802563 |
aaagttatcagataaatgtaccttacactatttgtaggggtcgagatttaaatctcagattctttacttccttatatttaaaatgtgtaaatc-----ta |
40802469 |
T |
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| Q |
270 |
tctactaaactattnnnnnnnnnnnggaataaaaagcaaatcatcatgtgttaactgtgattcactaattttaggacatcatcaatgggnnnnnnnatcg |
369 |
Q |
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| T |
40802468 |
tctactaaactattaaaaaaaaaaaagaataaaaagtaaattatcatgtgttaactgtggttcactaattttaggacatcatcaatgggtttttttatcg |
40802369 |
T |
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| Q |
370 |
gttagggaccaccacctaatagctaccccaatattgagatgaaaatagtgggaggttgttaagaaggggaagctatacgtacaagacccctctctcttct |
469 |
Q |
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| T |
40802368 |
gttagggaccaccacctaatagctaccccgatattgagatgaaaatagtgggaggttgttaagaaggggaagctatacgtacaagacccctctctcttct |
40802269 |
T |
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| Q |
470 |
catttttaagggtattatctaaaaaacttgtattaaaaaagttggtcgtagcattcaatgtaacgagtttaggttctttg |
549 |
Q |
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| T |
40802268 |
catttttaagggtattatctaaaaaacttgtattaaaaaagttggtcgtagcattcaatgtaacgagtttaggttctttg |
40802189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 40802741 - 40802590
Alignment:
| Q |
17 |
attctgacaaagcggcaatattttcagtaggttacttttttgaggaaatttatcagtaggttacaacttacaattaaaccccgttcacacaaaagcagga |
116 |
Q |
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| T |
40802741 |
attctgacaaagcggcaatattttcagtaggttacttttttgaggaaatttatcagtaggttacaacttacaattaaa--ccgttcacataaaagcagga |
40802644 |
T |
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| Q |
117 |
gcaatcaaactaaagttattaggaaaaaactatttatagtgaaaacctgtctca |
170 |
Q |
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| T |
40802643 |
gcaatcaaactaaagttattaggaaaaagctatttacagcaaaaacctgtctca |
40802590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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