View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9149_low_9 (Length: 551)
Name: NF9149_low_9
Description: NF9149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9149_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 297 - 522
Target Start/End: Complemental strand, 14771474 - 14771244
Alignment:
| Q |
297 |
attataatcataaacggtcttgctctcataaaaaagaacaactataaaattcacataatgaacaaataaaactgtgactccagtcaacaatattaattct |
396 |
Q |
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| T |
14771474 |
attataatcataaactgtcttgctctcataaaaaagaacaactataaaattcagataatgagcaaataaaactgtgactccagtcaacaatattaattct |
14771375 |
T |
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| Q |
397 |
tctttgtagcttttctttgatcctttctttgtgaagtagttgaaatatcttact-----tgcaatttcaacacaattgagttattagtttagtgcgtcta |
491 |
Q |
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| T |
14771374 |
tctttgtagcttttctttgaacctttctttgtgaagtagttgaaatatcttacttgacctgcaatttcaacacaattgagttattagtttagtgcgtctt |
14771275 |
T |
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| Q |
492 |
tttctctccaattaatgaatgaaacagcaac |
522 |
Q |
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| T |
14771274 |
tttctctacaattaatgaatgaaacagcaac |
14771244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 14771756 - 14771572
Alignment:
| Q |
19 |
tttagcacaaatccccatagcagtatcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattg |
118 |
Q |
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| T |
14771756 |
tttagcacaaacccccatagcagtatcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattg |
14771657 |
T |
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| Q |
119 |
atgattgagattggtgagnnnnnnnncgcatgccttcgttcttgacagtaaaccatttaacacttgtgtcaacgaatcctgactt |
203 |
Q |
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| T |
14771656 |
atgattgagattggcgaggaaaaaaacacatgccttcgttcttggcagtaaaccgtttaacacttgtgtcaacgaatcctgactt |
14771572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 47648566 - 47648614
Alignment:
| Q |
392 |
attcttctttgtagcttttctttgatcctttctttgtgaagtagttgaa |
440 |
Q |
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| T |
47648566 |
attcttttttgtagcttttgtttgaatctttctttgtgaagcagttgaa |
47648614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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