View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_high_11 (Length: 558)
Name: NF9150_high_11
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 27 - 549
Target Start/End: Original strand, 28857381 - 28857909
Alignment:
| Q |
27 |
cttaaaactgcatctttttgggattcattcagattttcagactggatcatggtatgtactttagaacaagcagcaatatc------gttttccccagaaa |
120 |
Q |
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| T |
28857381 |
cttaaaactgcatctttttgggattcattcagattctcagactggatcatggtatgtactttagaacaagcagcaatatcaatatggttttccccataaa |
28857480 |
T |
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| Q |
121 |
tacaaagttgacagttttctccgttctgcaaaatacgtagtaaacatgagttagttaataaacaaggtaagcatgtttcctctatagctataaataaaga |
220 |
Q |
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| T |
28857481 |
tacaaagttgacagttttctccgttctgcaaaatacgtagtaaacatgagttagttaataaaaaaagtaagcatgtttcctttatagctataaatacaga |
28857580 |
T |
|
| Q |
221 |
tagagagagaatctaacgacaaaagaattttgatccagcttttcaagggttcaattaccgaataaagattctcttcaattctcagaaaaaataaagattc |
320 |
Q |
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| T |
28857581 |
taaagagagaatctaacgacaaaagaattttgatccagcttttcaagggttcaattagcgaataaagattctcttcaattttcagaaaaaataaagattc |
28857680 |
T |
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| Q |
321 |
gtcactagagcttaggtgtgtaaaggatcatatgatatggtatcaggctacttgtgcatctatctaatgcatatgaacatttctaggaaaaaattgatat |
420 |
Q |
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| T |
28857681 |
gtcactagagcttaggtgtgtaaaggatcatatgatatggtatcatgctacttgtgcatctatctaatgcatataaacatttctaggaaaaatttaatat |
28857780 |
T |
|
| Q |
421 |
tggtaattaacaagttacacaattcgtaaatatgataaagcagtatattatttataagaacactcattaggaaatcagtgattcttacattcgaatcagc |
520 |
Q |
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| T |
28857781 |
tggtaattaacaagttacacaattcgtaaatatgataaagtagtatattatttataagaacactcgttaggaaattagtgattcttacatttgaatcagc |
28857880 |
T |
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| Q |
521 |
ttgcagcacctttttaatgatgtccatct |
549 |
Q |
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| T |
28857881 |
ttgcagcacctttttaatcatgttcatct |
28857909 |
T |
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