View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_high_29 (Length: 314)
Name: NF9150_high_29
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 40126484 - 40126646
Alignment:
| Q |
139 |
gaacatgaacatgacaataattatgaacatccttgtcctcatcttcaccaccctcttaacaacttcccactccgccacgtgtcctctcaacttcaccctc |
238 |
Q |
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| T |
40126484 |
gaacatgaacatgacaataattatgaacatcctcgtcctcatcttcaccactctcttaacaacttcccactccgccacgtgtcctctcaacttcaccctc |
40126583 |
T |
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| Q |
239 |
ttaaccaccctcagcggcggcggagccaccacaaaaccaccatcttccttcacctcaacacca |
301 |
Q |
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| T |
40126584 |
ttaaccaccctcagcggcggcggagccaccacaaaaccaccatcttccttcacctcaacacca |
40126646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 40126370 - 40126404
Alignment:
| Q |
19 |
ttatcaccaccactaaccacctccaccaattctcg |
53 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40126370 |
ttatcaccaccactaaccacctccaccaattctcg |
40126404 |
T |
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