View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_high_3 (Length: 715)
Name: NF9150_high_3
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 475 - 702
Target Start/End: Complemental strand, 11088405 - 11088178
Alignment:
| Q |
475 |
caatttcaaattccgggctcctccccatcttcacctctttttccctcaactctttaccactaatccattgaaacaaatgccaactatgtctaccacaaca |
574 |
Q |
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| T |
11088405 |
caatttcaaattccgggctcctccccatcttcacctcttttttcctcgactctttaccactaatccattgaaacaaatgtcaactatgtctaccacaaca |
11088306 |
T |
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| Q |
575 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatatatatta |
674 |
Q |
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| T |
11088305 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgtcatatatatta |
11088206 |
T |
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| Q |
675 |
cgataaccacactcctcttcatgtctct |
702 |
Q |
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| T |
11088205 |
cgataatcacactcctcttcatgtctct |
11088178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 200 - 446
Target Start/End: Complemental strand, 11088791 - 11088535
Alignment:
| Q |
200 |
tcttagttacgtgatggaaccattcatgtctacagaggaactgaatgtgaatcaatagaacaaggagttgataaatgtggtccatgactatagactttg- |
298 |
Q |
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| T |
11088791 |
tcttatttacgtgatggaaccattcatgtctatagaggaactgaatgtgaatcaatagaacaaagagttgataaacgtggtccatgactatagagtttgg |
11088692 |
T |
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| Q |
299 |
---gaaacaacttcaaaaaatcattcagatcagtttcatttgatgatgaatgat---ttaattgataataatgaatcatgagaaaaaattatcgtatcat |
392 |
Q |
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| T |
11088691 |
aaagaaacaacttcaaaaaatcattcagatcagtgtcatttgatgatgaatgatttattaattgataataatgaatcaagagaaaaatttatcatatcat |
11088592 |
T |
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| Q |
393 |
atca---tacttcgcaaagttcggggttcaaatcccaactaccacgaaaaaattatc |
446 |
Q |
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| T |
11088591 |
atcatagtactttgcaaagtctggggttcaaatcccgaccaccacgaaaaaattatc |
11088535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 11088893 - 11088784
Alignment:
| Q |
19 |
gataattcattactcaaccttatgctctaatgacaaagttgtttaaggctacgtatttttatcgtgtgctgattttttgaatgcccatatcggtcataat |
118 |
Q |
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| T |
11088893 |
gataattcattactcaaccttatgctctaatgacaaagttgtttaaggctacgtatttttatcgtgtgctgatttttt-aatgcccatatcggtcataat |
11088795 |
T |
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| Q |
119 |
ccttcttattt |
129 |
Q |
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| T |
11088794 |
ctttcttattt |
11088784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 702
Target Start/End: Original strand, 24508674 - 24508805
Alignment:
| Q |
571 |
aacatatcacaattgg-ttattcctcaattccaccatcc-tcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatat |
668 |
Q |
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|||||||||||||||| |||||||||||||||| ||||| | | ||||||| | |||||| |||||||||||| |||| |||||||||||| ||| || |
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| T |
24508674 |
aacatatcacaattggattattcctcaattccatcatcccttctttaaaactaattcaacataaactataaatcattaattctaccaccatacaccacat |
24508773 |
T |
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| Q |
669 |
atattacgataaccacactcctcttcatgtctct |
702 |
Q |
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| T |
24508774 |
at--tacgataactacactcctcttcttgtctct |
24508805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 2160375 - 2160310
Alignment:
| Q |
91 |
ttttttgaatgcccatatcggtcataatccttcttattttttggtgaagtttatggtctacacgagc |
157 |
Q |
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| T |
2160375 |
ttttttgaatgctcatattggtcataatccttctta-ttcttggtgaagcttatggtccacaagagc |
2160310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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