View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9150_high_7 (Length: 640)
Name: NF9150_high_7
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 331 - 629
Target Start/End: Original strand, 19436417 - 19436722
Alignment:
| Q |
331 |
gtaaccattgcaattagcttttcttgaaacaatcgctgtgaattttctcgtgatatttagcatcactctaatagtatatgtagtgctcaaagtttgaact |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
19436417 |
gtaaccattgcaattagcttttcttgaaacaattgctgtgaattttctcgtgatgtttagcatcactctaatagtatatgcagtgctcagagtttaaact |
19436516 |
T |
|
| Q |
431 |
ttaaacaccctatttatttatttaaaggtgaatttctacctact-------tnnnnnnnnctaataacaataatatgttgggcctaaaatatggtgtcaa |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19436517 |
ttaaacaccctatttatttatttaaaggtgaatttctagctactaatcacttaaaaaaaactaataacaatagaatgttgggcctaaaatatggtgtcaa |
19436616 |
T |
|
| Q |
524 |
tctcctagttgtaattgaatgactagggactaaattaatgattttattatagagacatatctcctaaaaatagaaaatagagacatataatggggcatag |
623 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19436617 |
tctcctaattgtaattgaatgactagggactaaattaatgattttattatagagacatatctcctaaaaatagaaaatagagacatataatggggcatag |
19436716 |
T |
|
| Q |
624 |
tataat |
629 |
Q |
| |
|
|||||| |
|
|
| T |
19436717 |
tataat |
19436722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 19435930 - 19436063
Alignment:
| Q |
29 |
aaaacttttgcagatattattggtaagtttgatagctaggttcaacatttaatcttgcttcatctagcacaacacaattaaaacttcatacaaaatatgc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19435930 |
aaaacttttgcagatattattggtaagtttgatagctaggttcacaatttaatcttgcttcatctagcacaac---attaaaacttcatacaaaatatgc |
19436026 |
T |
|
| Q |
129 |
tagaacctttagtaaggtataaaatttccttcctcct |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19436027 |
tagaacctttagtaaggtataaaatttccttcctcct |
19436063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 25462052 - 25462136
Alignment:
| Q |
29 |
aaaacttttgcagatattattggtaagtttga---tagctaggttcaacatttaatcttgcttcatctagcacaacacaattaaa |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| || ||| ||||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
25462052 |
aaaacctttgcagatattattggtaagtttgaatttagttatgtttaacatttaatctttcttcatctagcacaataaaattaaa |
25462136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 6297652 - 6297716
Alignment:
| Q |
28 |
taaaacttttgcagatattattggtaagtttgatagctaggttcaacatttaatcttgcttcatcta |
94 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| |||||||| || ||| |||||||||||||| |
|
|
| T |
6297652 |
taaaacctttgcagatattattggtaagttt--tagttaggttcaccagttattcttgcttcatcta |
6297716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University