View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9150_low_11 (Length: 679)

Name: NF9150_low_11
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9150_low_11
NF9150_low_11
[»] chr7 (4 HSPs)
chr7 (437-664)||(39603432-39603658)
chr7 (203-350)||(39603726-39603879)
chr7 (352-389)||(39603663-39603700)
chr7 (132-169)||(39603892-39603929)
[»] chr4 (3 HSPs)
chr4 (132-323)||(21828000-21828198)
chr4 (437-564)||(21827774-21827905)
chr4 (603-664)||(21827688-21827749)
[»] chr3 (1 HSPs)
chr3 (31-113)||(40895556-40895638)
[»] chr5 (3 HSPs)
chr5 (615-661)||(42811989-42812035)
chr5 (615-661)||(43022368-43022414)
chr5 (618-658)||(35061042-35061082)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 1e-89; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 437 - 664
Target Start/End: Complemental strand, 39603658 - 39603432
Alignment:
Q  437 gtttttgaggtgctgagtttttgctacacaaaatatatttataggatgtgtgtttatgtttatattttccttatgtctattgtatgaattgtaaattgta 536  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| || |||||| |||||||||||||||||||| |||||||||    
T  39603658 gtttttgaggtgctgagttttt-ctacacaaaatatatgtataggatgtgtgtttgtgtctacattttcattatgtctattgtatgaattataaattgta 39603560  T
Q  537 gctttgaaacctatttatggaacaagaaatttgtgtttgattatatctactacttgaactccaaggtgattgaaacaattatcaagttcaaggtgattga 636  Q
    |||||||||||||| ||||||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39603559 gctttgaaacctatgtatggaacaagaattttgtgcttgcttatgtctactacttgaactccaaggtgattgaaacaattatcaagtttaaggtgattga 39603460  T
Q  637 aacaatcatgatttggatcttacttatt 664  Q
    |||||||||||||| |||||||||||||    
T  39603459 aacaatcatgatttagatcttacttatt 39603432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 203 - 350
Target Start/End: Complemental strand, 39603879 - 39603726
Alignment:
Q  203 atgttttttataactcaataaattggttttattttttatgggtgctgatttgtaacttcattggctgattgagaaatttgtcaaggtatgtttgtgtacc 302  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||       
T  39603879 atgttttttctaactcaatgaattggttttatttttgatgggtgctgattagtaacttcattggctgattgagaaatttgtcaaggtctgtttgtgttaa 39603780  T
Q  303 atttttaatgttaaata------aaatagtatgttggttcatagaagaatatat 350  Q
    |||||||||||||||||      |||||||||||||||| ||||||||| ||||    
T  39603779 atttttaatgttaaataaaattaaaatagtatgttggtttatagaagaacatat 39603726  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 389
Target Start/End: Complemental strand, 39603700 - 39603663
Alignment:
Q  352 tacaagtgagtgttgtacttgcatcttgttgtttttgc 389  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  39603700 tacaagtgagtgttgtacttgcatctctttgtttttgc 39603663  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 39603929 - 39603892
Alignment:
Q  132 tcattgttatcaacccaaaattaaggattattttgcaa 169  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  39603929 tcattgttatcaacccaaaatcatggattattttgcaa 39603892  T

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Target: chr4 (Bit Score: 113; Significance: 7e-57; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 132 - 323
Target Start/End: Complemental strand, 21828198 - 21828000
Alignment:
Q  132 tcattgttatcaacccaaaattaaggattattttgcaactattatgtttgagacatgtaactttcagattgatgttt-------tttataactcaataaa 224  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||   |||  | |||||||||||||       ||||||||| ||| ||    
T  21828198 tcattgttatcaacccaaaatcaaggattattttgcaactattatgtttgagaccaataatgtacagattgatgtttatgtttttttataactgaatgaa 21828099  T
Q  225 ttggttttattttttatgggtgctgatttgtaacttcattggctgattgagaaatttgtcaaggtatgtttgtgtaccatttttaatgttaaataaaat 323  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||    
T  21828098 ttggttttattttttatgggtgttgattagtaacttcattggctgattgagaaatttgtcaaggtctgtttgtgtttaatttttaatgttaaataaaat 21828000  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 437 - 564
Target Start/End: Complemental strand, 21827905 - 21827774
Alignment:
Q  437 gtttttgaggtgctgagtttttgctacacaaaatatatttataggat----gtgtgtttatgtttatattttccttatgtctattgtatgaattgtaaat 532  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||    |||||||| ||| || |||||| |||||||||||||||||| |||||||    
T  21827905 gtttttgaggtgctgattttttgctacacaaaatatatgtataggatcgatgtgtgtttgtgtctacattttctttatgtctattgtatgaactgtaaat 21827806  T
Q  533 tgtagctttgaaacctatttatggaacaagaa 564  Q
    |||||||||||||||||| |||||||||||||    
T  21827805 tgtagctttgaaacctatgtatggaacaagaa 21827774  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 603 - 664
Target Start/End: Complemental strand, 21827749 - 21827688
Alignment:
Q  603 tgattgaaacaattatcaagttcaaggtgattgaaacaatcatgatttggatcttacttatt 664  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21827749 tgattgaaacagttatcaagtttaaggtgattgaaacaatcatgatttggatcttacttatt 21827688  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 40895638 - 40895556
Alignment:
Q  31 ttaactaatactaacactcttttctgaatgaactttaggttggtggttgatatttcagcaacgatcgtgaggttagtttcaat 113  Q
    |||||| ||||| ||||| |||||| | |||||||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  40895638 ttaactgatactgacacttttttctcattgaactttaggttggtggttgatatttcagcaactacagtgaggttagtttcaat 40895556  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 42812035 - 42811989
Alignment:
Q  615 ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt 661  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42812035 ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt 42811989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 43022414 - 43022368
Alignment:
Q  615 ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt 661  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43022414 ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt 43022368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 618 - 658
Target Start/End: Complemental strand, 35061082 - 35061042
Alignment:
Q  618 tcaagttcaaggtgattgaaacaatcatgatttggatctta 658  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35061082 tcaagttcaaggtgattgaaacaatcatgatttggatctta 35061042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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