View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_12 (Length: 646)
Name: NF9150_low_12
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 7 - 633
Target Start/End: Complemental strand, 41062060 - 41061434
Alignment:
| Q |
7 |
attgtttgaactcagcaataatctttctaaaggtagatgagaaaagtttttgagcatcaaaagactgttggttatatgatttacgaaatggagcattggg |
106 |
Q |
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| T |
41062060 |
attgtttgaactcagcaataatctttctaaaggtagatgagaaaagtttttgagcatcagaagactgttggtgatatgatttacgaaatggagcattggg |
41061961 |
T |
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| Q |
107 |
aaatgatttccatccagaaatctgatcaatatgattcaaggcaacaatgaagtatttgttgcggctatgtaaaagatcgattgattcaacagtttgtggt |
206 |
Q |
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| T |
41061960 |
aaatgatttccatccagaaatctgatcaatatgattcaaggcaacaatgaagtatttgttgcggctatgtaaaagatcgattgattcaacagtttgtggt |
41061861 |
T |
|
| Q |
207 |
tgtaaggtgtatttattaatgtcaacaacaaggattgcaatatcacatagagctgtagagagagaccttgaaacagtgagaagtggttggccaggggtgt |
306 |
Q |
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| T |
41061860 |
tgtaaggtgtatttattaatgtcaacaacaaggattgcaatatcacatagagctgtagagagagaccttgaaacagtgagaagtggttggccaggggtgt |
41061761 |
T |
|
| Q |
307 |
caataaagagtaaaccaggaagtctgattgattgatgatagggtatcatttcaaagtatgtggcagaattagatatagtagaattagaaggaggaggatt |
406 |
Q |
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| T |
41061760 |
caataaagagtaaaccaggaagtctgattgattgatgatagggtatcatttcaaagtatgtggcagaattagttatagtagaattagaaggaggtggatt |
41061661 |
T |
|
| Q |
407 |
aggaactactttaccacgcatataatccagcagcgtagtttttccactccccatatgacccaacattgagcaaattggagcacggatagggttctcaata |
506 |
Q |
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| T |
41061660 |
aggaactactttaccacgcatataatccagcagcgtagtttttccactccccatatgacccaacattgagcaaattggagcacggatagggttctcaata |
41061561 |
T |
|
| Q |
507 |
attatagaagctgcttttgcagctgcaaaagcttcagcctcagcagcagccctaccagccctcgccgttttcgaattcatttcatcaatcaaactcaata |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41061560 |
attatagaagctgcttttgcagctgcaaaagcttcagcctcagcagcagccctaccagccctcgccgatttcgaattcatttcatcaatcaaactcaata |
41061461 |
T |
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| Q |
607 |
agatataatcaccacctgaatatgatg |
633 |
Q |
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| T |
41061460 |
agctataatcaccacctgaatatgatg |
41061434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 41371259 - 41371219
Alignment:
| Q |
220 |
tattaatgtcaacaacaaggattgcaatatcacatagagct |
260 |
Q |
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| T |
41371259 |
tattaatgtcaacaaccaagattgcaatatcacatagagct |
41371219 |
T |
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