View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_27 (Length: 536)
Name: NF9150_low_27
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 22 - 445
Target Start/End: Original strand, 33303468 - 33303891
Alignment:
| Q |
22 |
ctctaataatataccagtgaaaactacacttcaatatacaccaacattttttggcaacttcatagttacacttcaatataacatgtgctttctttgacgg |
121 |
Q |
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| T |
33303468 |
ctctaataatataccagtgaaaactacacttcaatatacaccaacattttttggcaacttcatagttacacttcaatataacatgtgctttctttgacgg |
33303567 |
T |
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| Q |
122 |
caattagaccaagattgtcattgttacatatgatacagtcaactcattcaaccatggtggaattatatttcttcctctatagtctagtggttaagaaaac |
221 |
Q |
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| T |
33303568 |
aaattagaccaagattgtcattgttacatatgatacagtcaactcattcaaccatggtggaattatatttcttcctctatagtctagtggttaagaaaac |
33303667 |
T |
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| Q |
222 |
atagtgttacatagttagtaagtaagaaagaatgaacacattattattacccaaaagatcggttttgcttttgttttccatcctcttattcataattgtc |
321 |
Q |
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| T |
33303668 |
atagtgttacatagttagtaagtaagaaagaatgaacacattattattacccaaaagatcggttttgcttttgttttccatcctcttattcataattgtc |
33303767 |
T |
|
| Q |
322 |
gttaccattagtaatgcagaagatgaagaggcaaattacatgtccgaccttttgttttgaaatcactaacctcaactccctctaactggtctaacaaaac |
421 |
Q |
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| T |
33303768 |
gttaccattagtaatgcagaagatgaagaggcaaattacatgtccgaccttttgttttgaaatcactaacctcaactccctctaactggtctaacaaaac |
33303867 |
T |
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| Q |
422 |
tcactactgcaaatggaatggcat |
445 |
Q |
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| T |
33303868 |
tcactactgcaaatggaatggcat |
33303891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 31535434 - 31535359
Alignment:
| Q |
376 |
ttttgaaatcactaacctcaactccctctaactggtctaacaaaactcactactgcaaatggaatggcattgtttg |
451 |
Q |
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| T |
31535434 |
ttttgaaagcactaaccccaactccctctaactggtctaacaacactcactactgcagatggaacggcattgtttg |
31535359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 473 - 522
Target Start/End: Original strand, 33303889 - 33303938
Alignment:
| Q |
473 |
catcaaatctcagtcagtgccctctccaatcttactcacattgatctcca |
522 |
Q |
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| T |
33303889 |
catcaaatctcagtcagtgccctctctaatcttactcacattgatctcca |
33303938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 31550594 - 31550696
Alignment:
| Q |
376 |
ttttgaaatcactaacctcaactccctctaactggtctaacaaaactcactactgcaaatggaatggcattgtttgccaatctagtcgagttgtcgccat |
475 |
Q |
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|||||||| || | ||| ||||||| ||| |||||||||||| ||||| ||||||| |||| |||||| || ||||||||||||| |||||| ||||| |
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| T |
31550594 |
ttttgaaagcattgaccccaactccttctggctggtctaacaacactcatcactgcaattggactggcatcgtctgccaatctagtcaagttgtggccat |
31550693 |
T |
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| Q |
476 |
caa |
478 |
Q |
| |
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||| |
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|
| T |
31550694 |
caa |
31550696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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