View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_29 (Length: 532)
Name: NF9150_low_29
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_29 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 91 - 515
Target Start/End: Complemental strand, 69072 - 68648
Alignment:
| Q |
91 |
tgtcctttgtatcctagatcaattagtccgcagttatccataactcgtttatgatgaagcatattgttttggcttcgtatattgcctcccatcttctttg |
190 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69072 |
tgtccttcgtatcctagatcaattagtccgcagttatccataactcgtttatgatgaagcatattgttttggcttcgtatattgcctcccatcttctttg |
68973 |
T |
|
| Q |
191 |
aggaaaagataatgtcgttaaaatctctaaaacatgtccattacaaattagttgccatgttatctctttattgcccttttttgggtaccatatatgcctg |
290 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
68972 |
aggaaaagataatgtcgttaaaatctgtaaaacatgtccattacaaattagttgccatgttatccctttattgcccttttctgggtaccatatatgcctg |
68873 |
T |
|
| Q |
291 |
aaatatgacattggtttccttgttcgccatctttaaaacgaccccaaatatggttcaaagaacatgatggaattgtgatttgtaattaatcattttataa |
390 |
Q |
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|||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
68872 |
aaatatgacactggtttccttgttcaccgtctttaaaacgaccccaaacatggttcaaagaacatgatggaatagtgatttgtaattaatcatttcataa |
68773 |
T |
|
| Q |
391 |
caaagccaaacctccaacacgctcttttccaattcctctacaacccactacttgacaggaattaaaccacattttttctttaaacctttcatctcaaaac |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
68772 |
caaagccaaacctccaacacgctcttttccaattcctctacaacccactacttgacaggaattaaaccacatttttgctttaaacctttcatctcaaaac |
68673 |
T |
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| Q |
491 |
tctttaatcgacaagaggactccct |
515 |
Q |
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| T |
68672 |
tctttaatcgacaagaggactccct |
68648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 91 - 515
Target Start/End: Complemental strand, 76915 - 76491
Alignment:
| Q |
91 |
tgtcctttgtatcctagatcaattagtccgcagttatccataactcgtttatgatgaagcatattgttttggcttcgtatattgcctcccatcttctttg |
190 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76915 |
tgtccttcgtatcctagatcaattagtccgcagttatccataactcgtttatgatgaagcatattgttttggcttcgtatattgcctcccatcttctttg |
76816 |
T |
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| Q |
191 |
aggaaaagataatgtcgttaaaatctctaaaacatgtccattacaaattagttgccatgttatctctttattgcccttttttgggtaccatatatgcctg |
290 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
76815 |
aggaaaagataatgtcgttaaaatctgtaaaacatgtccattacaaattagttgccatgttatccctttattgcccttttctgggtaccatatatgcctg |
76716 |
T |
|
| Q |
291 |
aaatatgacattggtttccttgttcgccatctttaaaacgaccccaaatatggttcaaagaacatgatggaattgtgatttgtaattaatcattttataa |
390 |
Q |
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|||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
76715 |
aaatatgacactggtttccttgttcaccgtctttaaaacgaccccaaacatggttcaaagaacatgatggaatagtgatttgtaattaatcatttcataa |
76616 |
T |
|
| Q |
391 |
caaagccaaacctccaacacgctcttttccaattcctctacaacccactacttgacaggaattaaaccacattttttctttaaacctttcatctcaaaac |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
76615 |
caaagccaaacctccaacacgctcttttccaattcctctacaacccactacttgacaggaattaaaccacatttttgctttaaacctttcatctcaaaac |
76516 |
T |
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| Q |
491 |
tctttaatcgacaagaggactccct |
515 |
Q |
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||||||||||||||||||||||||| |
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| T |
76515 |
tctttaatcgacaagaggactccct |
76491 |
T |
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