View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_3 (Length: 886)
Name: NF9150_low_3
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 463 - 869
Target Start/End: Complemental strand, 38484952 - 38484542
Alignment:
| Q |
463 |
tttagacaatgaagcaatgcccttaaaaacttaccatttaccttaatttaaagtgaaatgaatcacattcatgtctaattttatgtacatgcatccaatt |
562 |
Q |
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| T |
38484952 |
tttagacaatgaagcaatgcccttaaaaacttaccatttaccttaatttaaagtgaaatgaatctcattcatgtctaattttatgtacatgcatccaatt |
38484853 |
T |
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| Q |
563 |
ttgtgagtaactactattacnnnnnnnnaggggatgagtaaaactgtaaaaggattgggaaagatgaatgtgattgtgaatgcacgtgaacgtagagggg |
662 |
Q |
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| T |
38484852 |
ttcagagtaactactattacttttttttaggggatgagtaaaactgtaaaaggattgggaaagataaatgtgattgtgaatgcacgtgaacgtagagggg |
38484753 |
T |
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| Q |
663 |
ctgaagttgatccatccatataaccctgtggggtatgattatgaatgatgagtgaaaaagtaaagtgaattccaaatggaagcacttatgcacacgtaaa |
762 |
Q |
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| T |
38484752 |
ctgaagttgatccatccatataaccctgtggggtatgattatgaatgatgagtgaaaaagtatagtgaattccaaatggaagcacttatgcacacgtaaa |
38484653 |
T |
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| Q |
763 |
agaagggaatccatcatgatcatcatcatcatgagtatgaccattaagcaatgatactacattacataa----tatacccaccaaaaatcatatcctctc |
858 |
Q |
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| T |
38484652 |
agaagggaatccatcatgatcatcatcatcatgagtatgaccattaagcaatgatactacattacataatacttatacccaccaaaaatcatatcctctc |
38484553 |
T |
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| Q |
859 |
ccccttcattt |
869 |
Q |
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| T |
38484552 |
ccccttcattt |
38484542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 38485419 - 38484979
Alignment:
| Q |
17 |
agaacgattttgacatttgaaatgcgcgctaccgaagttttcacattacaaaccaatcctcacaag-------gaggtatattaaaaattgtaaattatt |
109 |
Q |
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| T |
38485419 |
agaacgattttgacatttgaaatgcgc--tatcgaagttttcacgttacaaaccaatcctcacaagtcacaaggaggtatattaaaaattgtaaattatt |
38485322 |
T |
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| Q |
110 |
acatcaatcctcaactttaattatacactctctacgacttagtaacttgtctattttgcaatctatgtttaaacatgatccggtcatttggtgtggatca |
209 |
Q |
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| T |
38485321 |
acatcaatcctcaaccttaattatacactctctacgacttaacaacttgtctattttgcaatctatgtttaaacatgatccggtcatttgatgtggatca |
38485222 |
T |
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| Q |
210 |
caagtttgacgatgacatattacannnnnnnnnnnnnnnnnatgaaggagacatatcacattgttgtgagaatgtccgtcacactccaacactcaagtca |
309 |
Q |
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| T |
38485221 |
caaatttgacgatgacatatcacatttaattt---------atgaaggagacatatcacattgttatgagaatgtccgtcacactccaaccctcaagtca |
38485131 |
T |
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| Q |
310 |
ctttacaaatgaggtgggttgtgaaaattgtttggtagttgcggaatatcaactgtgatcgatgggatgccatgtgatcttgattaggttatcgggggct |
409 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38485130 |
ctttgcaaatgaggtgggttgtgaaaattgtttggtagttgcggaatatcaactgtgatcgatgggatgccatgtgatcttgattaggttattgggggct |
38485031 |
T |
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| Q |
410 |
aaggggtaatacatgtgtgttactgggtctgcgtaccaggtgttatgtgatt |
461 |
Q |
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| T |
38485030 |
aaggggtaatacatgtgtgttactgggtctgcgtaccaggtgttatgtgatt |
38484979 |
T |
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