View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_34 (Length: 505)
Name: NF9150_low_34
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 494
Target Start/End: Original strand, 35424998 - 35425483
Alignment:
| Q |
8 |
aggagcagagaaccaacgacaaaagtaatctatcttacgcaaacccttttcctgaccaagtatagtcaacacattgattagcctcgcggatgacatgaga |
107 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35424998 |
aggaggagagaaccaacgacaaaagtagtctatcttacgcaaaccctttttctagccaagtataatcaacacattgattagcctcgcggatgacatgaga |
35425097 |
T |
|
| Q |
108 |
caaagaaattgtccaatctcaatccaccaattctgcgatttgatgaagcatatatgtgtatgaatgaaatatatcgtgaaccatgtcccggatagtattt |
207 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35425098 |
caaagaaattgtccaatctcgatccaccaattctgcggtttgatgaagcatatatgtgtatgaatgaaatatatcgtgaaccatgtcccggatagtattt |
35425197 |
T |
|
| Q |
208 |
attgcatcctaagaatcagtctcacaaaccacgtttcaacacatttggtctttaaattaacactaatttagnnnnnnnnaatacaaccattttctattat |
307 |
Q |
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| T |
35425198 |
actgcatcctaagaatcagtctcacaaaccacgtttcaacacatttggcctttaaattaacactaatttag-tttttttaatacaaccattttctattat |
35425296 |
T |
|
| Q |
308 |
ttaaaacgaaatattgatgacaaaaaactagatattgtttgctaaacgtattagcaaaataaaatttaactttttcctgaatttttattacttataatac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35425297 |
ttaaaacgaaatattgatgacaaaaaactagatattgtttgctaaaagtattagcaaaataaaatttaactttttcctaaatttttattacttataatac |
35425396 |
T |
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| Q |
408 |
ttaatattgaannnnnnnnnatgaaatgtaaacaattagtataatgtaccaataactcttgttcataaaaattattgtttattgatg |
494 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35425397 |
ttaatattgatttttcttttatgaaatgtaaacaattagtataatgtaccaataactcttgttcataaaaattattgtttattgatg |
35425483 |
T |
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