View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_35 (Length: 470)
Name: NF9150_low_35
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 16825774 - 16826215
Alignment:
| Q |
17 |
aaatttaatggtcggtatgactgcagcaccatacaaccgccgtaagggatctaagtacgagtgccaaataaaaaccaaccctttcttattttccattttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16825774 |
aaatttaatggtcggtatgactgcagcaccatacaacctccgtaagggatctaagtacgagtgccaaatgaaaaccaaccctttcttattttccattttc |
16825873 |
T |
|
| Q |
117 |
tttgtataatggaacacatgtattgcgttgtacttgtataacatatgtctactataattacatgatttttaattttcagattgatagaatttcaacaatg |
216 |
Q |
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|||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16825874 |
tttgaataatgggacacatgtattgtgttgtacttgtataacatatgtctactataattacatgatttttaattttcagattgatagaatttcaacaatg |
16825973 |
T |
|
| Q |
217 |
gcagcgaagtacgttgggaagccagtggtgaactactcaaacatttcgccatctctcccaccacgtacggaaattggttttggcaaccaacaagggattg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
16825974 |
gcagcgaagtacgttgggaagccagtggtgaactactcaaacatttcaccatctctcccaccacgtacggaaattggtttcggcaacccacaagggattg |
16826073 |
T |
|
| Q |
317 |
gtactatggacatgtatggagccagtggagatattctaaggtcaattagtgggccgaccgaagctgacaaaccaataataatagaactagctgttgcagc |
416 |
Q |
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| T |
16826074 |
gtactatggacatgtatggagccagtggagatattctaaggtcaattagtgggccgaccgaagctgacaaaccaattataatagaattagctgttgcagc |
16826173 |
T |
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| Q |
417 |
tatggaagagcttattggcatggcacaaatgggtgatcctct |
458 |
Q |
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| T |
16826174 |
tatggaagagcttattgggatggctcaaatgggtgatcctct |
16826215 |
T |
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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 455
Target Start/End: Complemental strand, 37303823 - 37303710
Alignment:
| Q |
342 |
tggagatattctaaggtcaattagtgggccgaccgaagctgacaaaccaataataatagaactagctgttgcagctatggaagagcttattggcatggca |
441 |
Q |
| |
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||||||| |||| || ||||| ||||| ||||||||||| || ||||| || ||||| || ||||||||||| |||||||| || || ||||| |||||| |
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| T |
37303823 |
tggagatcttcttagatcaataagtggaccgaccgaagccgataaaccgatgataattgagctagctgttgctgctatggaggaactcattggaatggca |
37303724 |
T |
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| Q |
442 |
caaatgggtgatcc |
455 |
Q |
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|||||||||||||| |
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| T |
37303723 |
caaatgggtgatcc |
37303710 |
T |
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