View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_38 (Length: 461)
Name: NF9150_low_38
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_38 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 4 - 443
Target Start/End: Complemental strand, 31062042 - 31061603
Alignment:
| Q |
4 |
actttcgtgttttataggaaaataatcctctctgttttttcacacttaggatgtgggacttgtgaacaagagttatggtatacacgcctcttccttctgt |
103 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31062042 |
actttcctattttataggaaaataatcctctctgttttttcacacttaggatgtgggacttgtgaacaagagttatggtatacacgcctcttccttctgt |
31061943 |
T |
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| Q |
104 |
ttctccctcggctagtacacaagtgcaaagcgtcctttggtactagatttaattctacaagctcaactataatacatgtgatatactaattaacactatc |
203 |
Q |
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| T |
31061942 |
ttctccctcggctagtacacaagtgcaaagcgtcctttggtactagatttaattctacaagctcaactataatacatgtgatatactaattaacactatc |
31061843 |
T |
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| Q |
204 |
gttgctttgactgatgcaaatgacattgatgatattttgtaactatttggaacagaatgatcttagatgatatgcaggatggtcaagcagttcaattaac |
303 |
Q |
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| T |
31061842 |
gttgctttgactaatgcaaatgacattgatgatattttctaactatttggaacagaatgatcttagatgatatgcaggatggtcaagcagttcaattaac |
31061743 |
T |
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| Q |
304 |
gggagttcaatcaagcaaagaagacaattatgcatatatatccactttgcttgatttaataattttattgaggtagctccacaaggtgaggcaggtaatc |
403 |
Q |
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| T |
31061742 |
gggagttcaatcaagcaaagaagacaattatgcatatatatccactttgcttgatttaataattttattgaggtagctccacaaggtgaggcatgtaatc |
31061643 |
T |
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| Q |
404 |
aaaattaggagtatcttagtgatgctattgatgagtcatt |
443 |
Q |
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| T |
31061642 |
aaaattaggagtatcttagtgatgctattgatgaatcatt |
31061603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 31037861 - 31037787
Alignment:
| Q |
13 |
ttttataggaaaataatcctctctgttttttcacacttaggatgtgggacttgtgaacaagagttatggtataca |
87 |
Q |
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| T |
31037861 |
ttttataggaaaataatcttatatgttgtttcacacttccgatgtgggacttctaaattaaagttatggtataca |
31037787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 16746 - 16820
Alignment:
| Q |
13 |
ttttataggaaaataatcctctctgttttttcacacttaggatgtgggacttgtgaacaagagttatggtataca |
87 |
Q |
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| T |
16746 |
ttttataagaaaatattcctctctattatttcacacttttgatgtgggacttctaaactaaagttatggcataca |
16820 |
T |
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