View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_4 (Length: 715)
Name: NF9150_low_4
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 56 - 700
Target Start/End: Complemental strand, 10277684 - 10277045
Alignment:
| Q |
56 |
aaaatgtctagtaattgtaccaacaaacaagtataaaacaaaaccgacaaacaagaagcaatatcacaaaaataaggtttcctcaattaattttgtactc |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10277684 |
aaaatgtctagtaattgtaccaacaaacaagtataaaacaaaaccgacaaacaagaagcaatatcacaaaaataaggtttcctcaattaattttgtactc |
10277585 |
T |
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| Q |
156 |
tttttatgacaaataattaattatttt-agtataaagttctataaattaagatatgtataaaataaatagaaaagnnnnnnnnnctacctcaagaagacg |
254 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| || ||||||||||||| || |
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| T |
10277584 |
tttttttgacaaataattaattatttttagtataaagttctacaaattaagatatgtataaaataaagagagaa------aaaactacctcaagaagccg |
10277491 |
T |
|
| Q |
255 |
tttggcaaagtccactgcaataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagta |
354 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10277490 |
tttggcaaaatccaccgcaataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagta |
10277391 |
T |
|
| Q |
355 |
tctgaaagtgatggtgtaggattaaataaacaacaattcaccacaagaattccaatatctttagcttcaactttggttttctcaagaagttcatcaacag |
454 |
Q |
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| T |
10277390 |
tctgaaagtgatggtgtaggattaaataaacaacaattcaccacaagaattccaatatctttagcttcaactttggttttctcaagaagttcatcaacag |
10277291 |
T |
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| Q |
455 |
ctccaaaaagaactaaatttgattcatttcttgcttcatcaagtgttaatcttggtggcatttccaataatgcttcaggaacataagtggtgggtcccac |
554 |
Q |
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| T |
10277290 |
ctccaaaaagaactaaatttgattcatttcttgcttcatcaagtgttagtcttggtggcatttccaataatgcttcaggaacataagtggtgggtcccac |
10277191 |
T |
|
| Q |
555 |
accagacctttctaatatcttatgaatcaaaatgaaactttcttcattaagaaaaccaaaattgtttgctctttccaacaacatttcttttgtgcaaaga |
654 |
Q |
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| T |
10277190 |
accagacctttctaaaatcttatgaatcaaaatgaaactttcttcattaagaaaaccaaaattgtttgctctttccaacaacatttcttttgtgcaaaga |
10277091 |
T |
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| Q |
655 |
caattgttttttggtttgtgacatgcaaaatctactaggtatattt |
700 |
Q |
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| T |
10277090 |
caattgttttttggtttgtgacatgcaaaatctactaggtatattt |
10277045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 274 - 419
Target Start/End: Complemental strand, 15237267 - 15237122
Alignment:
| Q |
274 |
ataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagtatctgaaagtgatggtgtag |
373 |
Q |
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|||| ||||||||| || |||||||||| ||||||||| |||| ||||||||||| | ||||||||||| ||||| | | ||||| |||||||| | |
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| T |
15237267 |
ataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttg |
15237168 |
T |
|
| Q |
374 |
gattaaataaacaacaattcaccacaagaattccaatatctttagc |
419 |
Q |
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| T |
15237167 |
gattaaacaaactacaattcacaaccaaaatcccaatatccttagc |
15237122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 419
Target Start/End: Complemental strand, 34052090 - 34051951
Alignment:
| Q |
280 |
ccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagtatctgaaagtgatggtgtaggattaa |
379 |
Q |
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|||||||| || |||||||||| ||||||||| | || ||| ||||| | ||||||||||| ||||| || | ||||| || ||||||||||||| |
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| T |
34052090 |
ccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaatcatagcagaaagagaaggtgtaggattaa |
34051991 |
T |
|
| Q |
380 |
ataaacaacaattcaccacaagaattccaatatctttagc |
419 |
Q |
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| T |
34051990 |
acaaactacaattcacaaccaaaatcccaatatccttagc |
34051951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 26452809 - 26452734
Alignment:
| Q |
343 |
ttaacaatagtatctgaaagtgatggtgtaggattaaataaacaacaattcaccacaagaattccaatatctttag |
418 |
Q |
| |
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| T |
26452809 |
ttaacaatcatagctgaaagtgatggcgttggattaaacaaactacaattaacaacaagtataccaatatctttag |
26452734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 48670748 - 48670675
Alignment:
| Q |
271 |
gcaataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgatt |
344 |
Q |
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||||||| |||||||| || |||||||||| ||||||||| ||||||||||||| || | ||||||||||| |
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| T |
48670748 |
gcaataattccagcactacaacccataccaccaagattataactcaaaatatttcccctcatcttataatgatt |
48670675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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