View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_42 (Length: 441)
Name: NF9150_low_42
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 38770827 - 38770401
Alignment:
| Q |
1 |
tcaaggtcaacttcccatcctctttgaggaagaaggtcaaagtagcgaacttcaaggagacaagaagcagcacgagaatcatattgtgggtagcctggtc |
100 |
Q |
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| T |
38770827 |
tcaaggtcaacttcccatcttctttgaggaagaagatcgaagtagcgaacttcaaggagacaagaagcagcacgagaatcatattgtgggtagcctggtc |
38770728 |
T |
|
| Q |
101 |
ttggaaggagaatgttggcaccgggacgtgcaagaacaggtaagattatatctatagcctgtgttccaccaactgtgagaaaaatatcttctggtgataa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38770727 |
ttggaaggagaatgttggcaccaggacgtgcaagaacaggtaagattatatctatagcctgtgttccaccaactgtgagaaaaatatcttctggtgataa |
38770628 |
T |
|
| Q |
201 |
ctggtatggaagatcagatgagaggtattttgcaatagccctgtttttatttttggaaggtcagcatattaagaaatcaacaaaaaatctgtcaaattgn |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38770627 |
ctggtatggaagatcagatgagaggtactttgcaatagccctgtttttatttttggaaggccagcatattaagaaatcaacaaaaaatctgtcaaattgt |
38770528 |
T |
|
| Q |
301 |
nnnnnnnnnnnggattaccaaataccatcattattcataccaattgttcacaaggaatggagtagtataatctcaaattgaacttaaaaaattgaatgtc |
400 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38770527 |
ttttgttttttggattaccaaataccatcattattcataccaatagttcacaaggaatggagtagtataatctcaaattgaacttaaaaaattgaatgtc |
38770428 |
T |
|
| Q |
401 |
gttcatggtcttggaagatgaattata |
427 |
Q |
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| T |
38770427 |
gttcatggtcttggaagatgaattata |
38770401 |
T |
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