View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9150_low_45 (Length: 425)

Name: NF9150_low_45
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9150_low_45
NF9150_low_45
[»] chr4 (13 HSPs)
chr4 (17-415)||(31081029-31081429)
chr4 (352-406)||(31081482-31081536)
chr4 (383-415)||(26281213-26281245)
chr4 (383-415)||(44182625-44182657)
chr4 (383-415)||(45044431-45044463)
chr4 (383-415)||(53596112-53596144)
chr4 (383-413)||(31081668-31081698)
chr4 (383-417)||(44183767-44183801)
chr4 (383-415)||(2734860-2734892)
chr4 (383-415)||(11815924-11815956)
chr4 (383-415)||(11816717-11816749)
chr4 (383-415)||(13630165-13630197)
chr4 (383-415)||(43630285-43630317)
[»] chr8 (2 HSPs)
chr8 (383-417)||(22594381-22594415)
chr8 (383-415)||(44553191-44553223)
[»] chr7 (9 HSPs)
chr7 (383-417)||(30475131-30475165)
chr7 (383-415)||(16955993-16956025)
chr7 (383-415)||(42753976-42754008)
chr7 (382-415)||(25443059-25443092)
chr7 (383-415)||(17236127-17236159)
chr7 (383-415)||(17278462-17278494)
chr7 (383-415)||(25445041-25445073)
chr7 (383-415)||(30474339-30474371)
chr7 (383-415)||(30765731-30765763)
[»] chr5 (15 HSPs)
chr5 (383-417)||(19798681-19798715)
chr5 (383-417)||(30645688-30645722)
chr5 (383-416)||(37191656-37191689)
chr5 (383-415)||(38384931-38384963)
chr5 (383-415)||(42767656-42767688)
chr5 (383-417)||(28905418-28905452)
chr5 (383-417)||(28941813-28941847)
chr5 (385-415)||(38385764-38385794)
chr5 (383-417)||(39548561-39548595)
chr5 (383-415)||(6794742-6794774)
chr5 (383-415)||(13824609-13824641)
chr5 (383-415)||(14347462-14347494)
chr5 (383-415)||(23082601-23082633)
chr5 (383-415)||(24041801-24041833)
chr5 (383-415)||(24042642-24042674)
[»] chr2 (5 HSPs)
chr2 (383-417)||(16329808-16329842)
chr2 (383-414)||(18950798-18950829)
chr2 (383-415)||(8029972-8030004)
chr2 (383-419)||(12602556-12602592)
chr2 (383-415)||(16330801-16330833)
[»] chr1 (10 HSPs)
chr1 (383-417)||(29021645-29021679)
chr1 (383-417)||(16659865-16659899)
chr1 (383-413)||(49652461-49652491)
chr1 (383-412)||(52750225-52750254)
chr1 (383-415)||(24326645-24326677)
chr1 (383-415)||(24332277-24332309)
chr1 (383-415)||(29022512-29022544)
chr1 (383-415)||(31698248-31698280)
chr1 (383-415)||(36142173-36142205)
chr1 (383-415)||(38658839-38658871)
[»] scaffold0259 (1 HSPs)
scaffold0259 (383-415)||(12105-12137)
[»] scaffold0150 (1 HSPs)
scaffold0150 (383-415)||(38945-38977)
[»] chr3 (6 HSPs)
chr3 (383-415)||(34817394-34817426)
chr3 (383-415)||(52254366-52254398)
chr3 (384-415)||(17514672-17514703)
chr3 (383-417)||(42541161-42541195)
chr3 (383-417)||(54831918-54831952)
chr3 (383-415)||(32305233-32305265)
[»] scaffold0202 (1 HSPs)
scaffold0202 (383-417)||(22166-22200)
[»] scaffold0192 (1 HSPs)
scaffold0192 (383-417)||(14666-14700)
[»] chr6 (5 HSPs)
chr6 (383-417)||(27128907-27128941)
chr6 (383-415)||(902717-902749)
chr6 (383-415)||(8850281-8850313)
chr6 (383-415)||(12261453-12261485)
chr6 (383-415)||(28865662-28865694)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 31081029 - 31081429
Alignment:
Q  17 atatcaatttaatcacatcaaataagttgaatttaatgaaatattattaagctattgaaacaaatttaatgaaagactatattaagctattgaaacaatg 116  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||    
T  31081029 atatcaattgaattacatcaaataagttgaatttaatgaaatattattaagctattgaaacaaatttaatgaaagactatattaagctaattaa-caatg 31081127  T
Q  117 aagaatgagaataaatttatcaaaaattcaaatgagttgattannnnnnngtttgaaagagtttagagatgaaactcttacacgttatgtgtggagaagt 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31081128 aagaatgagaataaatttatcaaaaattcgaatgagttgattatttttttgtttgaaagagtttagagatgaaactcttatacgttatgtgtggagaagt 31081227  T
Q  217 tagaaatagaaaattcaaattcttgtcgaacttttaatatatcaaatgtcctacagttttatctaatttttgtacttacgaagttacaagactaataagg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31081228 tagaaatagaaaattcaaattcttgtcgaacttttaatatatcaaatgtcctacggttttatctaatttttgtacttacgaagttacaagactaataagg 31081327  T
Q  317 tgcacctc---nnnnnnnnnncttctaaaaagagtgatttttgatgtatatatttggtatcgttttggtaaaaagattgtttgagtactttatctttatc 413  Q
    ||||||||             ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31081328 tgcacctcttttcttttttttcttctaaaaagagtgattttttatgtatatatttggtatcgttttggtaaaaagatcgtttgagtactttatctttatc 31081427  T
Q  414 tc 415  Q
    ||    
T  31081428 tc 31081429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 31081482 - 31081536
Alignment:
Q  352 ttttgatgtatatatttggtatcgttttggtaaaaagattgtttgagtactttat 406  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  31081482 ttttgacgtatttatttggtatcgttttggtaaaaagattgtttgagtactttat 31081536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 26281245 - 26281213
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  26281245 aaaaagattgtttgagtactttatctttatctc 26281213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 44182625 - 44182657
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  44182625 aaaaagattgtttgagtactttatctttatctc 44182657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 45044431 - 45044463
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  45044431 aaaaagattgtttgagtactttatctttatctc 45044463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 53596144 - 53596112
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  53596144 aaaaagattgtttgagtactttatctttatctc 53596112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Complemental strand, 31081698 - 31081668
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatc 413  Q
    |||||||||||||||||||||||||||||||    
T  31081698 aaaaagattgtttgagtactttatctttatc 31081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 44183801 - 44183767
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    ||||||||||||| |||||||||||||||||||||    
T  44183801 aaaaagattgtttaagtactttatctttatctctg 44183767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 2734860 - 2734892
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||||||||||| |||||    
T  2734860 aaaaagattgtttgagtactttatcttcatctc 2734892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 11815924 - 11815956
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||| |||||||||||||    
T  11815924 aaaaagattgtttgagtacattatctttatctc 11815956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 11816749 - 11816717
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||| ||||||||||||||    
T  11816749 aaaaagattgtttgagtattttatctttatctc 11816717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 13630165 - 13630197
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||| |||||||||||||||||||    
T  13630165 aaaaagattgtttaagtactttatctttatctc 13630197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 43630317 - 43630285
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||| ||||||||||||||    
T  43630317 aaaaagattgtttgagtattttatctttatctc 43630285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 22594381 - 22594415
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    |||||||||||||||||||||||||||||||||||    
T  22594381 aaaaagattgtttgagtactttatctttatctctg 22594415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 44553191 - 44553223
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||| ||||||||||||||    
T  44553191 aaaaagattgtttgagtattttatctttatctc 44553223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 30475165 - 30475131
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    |||||||||||||||||||||||||||||||||||    
T  30475165 aaaaagattgtttgagtactttatctttatctctg 30475131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 16955993 - 16956025
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  16955993 aaaaagattgtttgagtactttatctttatctc 16956025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 42753976 - 42754008
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  42753976 aaaaagattgtttgagtactttatctttatctc 42754008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 415
Target Start/End: Original strand, 25443059 - 25443092
Alignment:
Q  382 taaaaagattgtttgagtactttatctttatctc 415  Q
    |||||| |||||||||||||||||||||||||||    
T  25443059 taaaaaaattgtttgagtactttatctttatctc 25443092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 17236127 - 17236159
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||| ||||||||    
T  17236127 aaaaagattgtttgagtactttatttttatctc 17236159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 17278462 - 17278494
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||||||||||| |||||    
T  17278462 aaaaagattgtttgagtactttatcttcatctc 17278494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 25445073 - 25445041
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||| ||||||||||||||||||    
T  25445073 aaaaagattgtttgtgtactttatctttatctc 25445041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 30474339 - 30474371
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||| |||||||||||||||||    
T  30474339 aaaaagattgtttgaatactttatctttatctc 30474371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 30765731 - 30765763
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||||||||||| |||||    
T  30765731 aaaaagattgtttgagtactttatcttcatctc 30765763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 19798715 - 19798681
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    |||||||||||||||||||||||||||||||||||    
T  19798715 aaaaagattgtttgagtactttatctttatctctg 19798681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 30645722 - 30645688
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    |||||||||||||||||||||||||||||||||||    
T  30645722 aaaaagattgtttgagtactttatctttatctctg 30645688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 383 - 416
Target Start/End: Original strand, 37191656 - 37191689
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctct 416  Q
    ||||||||||||||||||||||||||||||||||    
T  37191656 aaaaagattgtttgagtactttatctttatctct 37191689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 38384931 - 38384963
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  38384931 aaaaagattgtttgagtactttatctttatctc 38384963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 42767688 - 42767656
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  42767688 aaaaagattgtttgagtactttatctttatctc 42767656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 28905452 - 28905418
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    ||||| |||||||||||||||||||||||||||||    
T  28905452 aaaaaaattgtttgagtactttatctttatctctg 28905418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 28941847 - 28941813
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    ||||| |||||||||||||||||||||||||||||    
T  28941847 aaaaaaattgtttgagtactttatctttatctctg 28941813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 38385794 - 38385764
Alignment:
Q  385 aaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||    
T  38385794 aaagattgtttgagtactttatctttatctc 38385764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 39548595 - 39548561
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    ||||||||||||||||||||||||||| |||||||    
T  39548595 aaaaagattgtttgagtactttatcttcatctctg 39548561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 6794774 - 6794742
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||||||||||| |||||    
T  6794774 aaaaagattgtttgagtactttatcttcatctc 6794742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 13824641 - 13824609
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||| ||||||||||||||    
T  13824641 aaaaagattgtttgagtattttatctttatctc 13824609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 14347462 - 14347494
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||| |||||||||||||||||||||||||||    
T  14347462 aaaaaaattgtttgagtactttatctttatctc 14347494  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 23082601 - 23082633
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||||||||||| |||||    
T  23082601 aaaaagattgtttgagtactttatcttcatctc 23082633  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 24041801 - 24041833
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||| ||||||||||||||    
T  24041801 aaaaagattgtttgagtattttatctttatctc 24041833  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 24042674 - 24042642
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||| ||||||||||||||    
T  24042674 aaaaagattgtttgagtattttatctttatctc 24042642  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 16329808 - 16329842
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    |||||||||||||||||||||||||||||||||||    
T  16329808 aaaaagattgtttgagtactttatctttatctctg 16329842  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 414
Target Start/End: Original strand, 18950798 - 18950829
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatct 414  Q
    ||||||||||||||||||||||||||||||||    
T  18950798 aaaaagattgtttgagtactttatctttatct 18950829  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 8030004 - 8029972
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||||||||||| |||||    
T  8030004 aaaaagattgtttgagtactttatcttcatctc 8029972  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 12602592 - 12602556
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctgct 419  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  12602592 aaaaagattgtttgagtattttatatttatctctgct 12602556  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 16330833 - 16330801
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||| ||||||||||||||    
T  16330833 aaaaagattgtttgagtattttatctttatctc 16330801  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 29021645 - 29021679
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    |||||||||||||||||||||||||||||||||||    
T  29021645 aaaaagattgtttgagtactttatctttatctctg 29021679  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 16659899 - 16659865
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    ||||| |||||||||||||||||||||||||||||    
T  16659899 aaaaaaattgtttgagtactttatctttatctctg 16659865  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Original strand, 49652461 - 49652491
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatc 413  Q
    |||||||||||||||||||||||||||||||    
T  49652461 aaaaagattgtttgagtactttatctttatc 49652491  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 383 - 412
Target Start/End: Original strand, 52750225 - 52750254
Alignment:
Q  383 aaaaagattgtttgagtactttatctttat 412  Q
    ||||||||||||||||||||||||||||||    
T  52750225 aaaaagattgtttgagtactttatctttat 52750254  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 24326645 - 24326677
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||| |||||||||||||||||||||||    
T  24326645 aaaaagattatttgagtactttatctttatctc 24326677  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 24332309 - 24332277
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||| |||||||||||||||||||||||    
T  24332309 aaaaagattatttgagtactttatctttatctc 24332277  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 29022544 - 29022512
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||| |||||||||||||||||||    
T  29022544 aaaaagattgtttaagtactttatctttatctc 29022512  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 31698280 - 31698248
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||| |||||||||||||||||||||||||||    
T  31698280 aaaaaaattgtttgagtactttatctttatctc 31698248  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 36142173 - 36142205
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||| |||||||||||||||||||    
T  36142173 aaaaagattgtttaagtactttatctttatctc 36142205  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 38658871 - 38658839
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||| ||||||||    
T  38658871 aaaaagattgtttgagtactttatatttatctc 38658839  T

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Target: scaffold0259 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 12105 - 12137
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  12105 aaaaagattgtttgagtactttatctttatctc 12137  T

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Target: scaffold0150 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 38945 - 38977
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  38945 aaaaagattgtttgagtactttatctttatctc 38977  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 34817394 - 34817426
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  34817394 aaaaagattgtttgagtactttatctttatctc 34817426  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 52254366 - 52254398
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||||||||||||    
T  52254366 aaaaagattgtttgagtactttatctttatctc 52254398  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 415
Target Start/End: Complemental strand, 17514703 - 17514672
Alignment:
Q  384 aaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||||||||||||||||    
T  17514703 aaaagattgtttgagtactttatctttatctc 17514672  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 42541195 - 42541161
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    ||||||||||||||||||||||||||| |||||||    
T  42541195 aaaaagattgtttgagtactttatcttcatctctg 42541161  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 54831918 - 54831952
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    |||||||||||||||||| ||||||||||||||||    
T  54831918 aaaaagattgtttgagtattttatctttatctctg 54831952  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 32305265 - 32305233
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||||||||||| |||||    
T  32305265 aaaaagattgtttgagtactttatcttcatctc 32305233  T

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Target: scaffold0202 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 22200 - 22166
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    |||||||||||||||||||||||| ||||||||||    
T  22200 aaaaagattgtttgagtactttatttttatctctg 22166  T

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Target: scaffold0192 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 14700 - 14666
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    |||||||||||||||||| ||||||||||||||||    
T  14700 aaaaagattgtttgagtattttatctttatctctg 14666  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 27128907 - 27128941
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctctg 417  Q
    ||||||||||||||||||||||||||| |||||||    
T  27128907 aaaaagattgtttgagtactttatcttcatctctg 27128941  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 902749 - 902717
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||| |||||||||||||||||||    
T  902749 aaaaagattgtttaagtactttatctttatctc 902717  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 8850281 - 8850313
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||||||| ||||||||    
T  8850281 aaaaagattgtttgagtactttatttttatctc 8850313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 12261485 - 12261453
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    ||||||||||||||||||||||||||| |||||    
T  12261485 aaaaagattgtttgagtactttatcttcatctc 12261453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 28865662 - 28865694
Alignment:
Q  383 aaaaagattgtttgagtactttatctttatctc 415  Q
    |||||||||||||||||||| ||||||||||||    
T  28865662 aaaaagattgtttgagtactatatctttatctc 28865694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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