View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_49 (Length: 398)
Name: NF9150_low_49
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 125 - 383
Target Start/End: Complemental strand, 54200994 - 54200722
Alignment:
| Q |
125 |
caattaccaccagcggcgctaatgataaccaagtgagcgtgtaccaatctgcaaagatgaatgaagttaatttaaatactaaaaattcaatatcaagtgt |
224 |
Q |
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| T |
54200994 |
caattaccaccagcggcgctaatgataaccaagtgagcgtgtaccaatctgcaaagatgaatgaagttaatttaaatactaaaaattcaatattaagtgt |
54200895 |
T |
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| Q |
225 |
aatag--------------tgtgagttagagagatcagaatgactttacttactgtaaacgttcataagcagaaaaatgatcgcaaaagcccataaagga |
310 |
Q |
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| T |
54200894 |
aatagcgtgcgtgtgacagtgtgagttagagagatcagaatgactttacttactgtaaacgttcataagcagaaaaatgatcgcaaaagcccataaagga |
54200795 |
T |
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| Q |
311 |
acactgcaaaacagaaactagctagtgagataacaaatttaataacagcttaaacaaaagtgattgaagattg |
383 |
Q |
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| T |
54200794 |
acactgcaaaacagaaactagctagtgagataacaaatttaataacagcttaaacaaaagtgattgaagattg |
54200722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 54201105 - 54201057
Alignment:
| Q |
14 |
agattttgaattgtaaacaccagtattatgctgatcatgttcatgtgcc |
62 |
Q |
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| T |
54201105 |
agattttgaattgtaaacaccagtattatgctgatcatgttcatgtgcc |
54201057 |
T |
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