View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_53 (Length: 342)
Name: NF9150_low_53
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 31837589 - 31837898
Alignment:
| Q |
19 |
ttaataccatacaatagatnnnnnnntcaaccgtaattttcaccaaagtattcatgtgctaattcgaagaacactggactaagttctgctgaaatattta |
118 |
Q |
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| T |
31837589 |
ttaataccatacaatagataaaaaaatcaaccgtaattttcaccaaagtattcatgtgctacttcgaagaacactggactaagttctgctggaatattta |
31837688 |
T |
|
| Q |
119 |
actgaaatcccaaatttcatatttacaaattataacatagtgtattcttgaaatacatgtaaatatatgtatatggagaattaatttgatatgaccatgt |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31837689 |
actgaaatcccaaatttcatatatacaaattataacatagtgtattcttgaaatacatgtaaatatatgtatatggaggattaatttgatatgaccatgt |
31837788 |
T |
|
| Q |
219 |
tgtttgtagtaattacaagatcccttattgtaagaacgagaaacatgttcaaattgtttgctttaaaaatgttgatggacaagaatttagacgaggttca |
318 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837789 |
tgtttgtagtaattacaagatcccttattgtaacaacgagaaacatgttcaaattgtttgctttaaaaatgttgatggacaagaatttagacgaggttca |
31837888 |
T |
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| Q |
319 |
gctgatgtcc |
328 |
Q |
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|||||||||| |
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| T |
31837889 |
gctgatgtcc |
31837898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 182
Target Start/End: Original strand, 38041279 - 38041413
Alignment:
| Q |
45 |
tcaaccgtaattttcaccaaagtattcatgtgctaattcgaagaacac-tggactaagttctgctgaaatatttaactgaaatcccaaatttcatattta |
143 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||| |||||| ||||| || |||||||||| ||||| |||||||| | | || |
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| T |
38041279 |
tcaaccataattttcaccaaagtat----gtgctgcttcgaagaacagatggacttgattctgttggaatatttaacagaaattccaaattttaaagata |
38041374 |
T |
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| Q |
144 |
caaattataacatagtgtattcttgaaatacatgtaaat |
182 |
Q |
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| T |
38041375 |
caaattataacttagtgtattgttgaaatacatgtaaat |
38041413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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