View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_55 (Length: 339)
Name: NF9150_low_55
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 33823589 - 33823284
Alignment:
| Q |
18 |
tttatgttcttctgttctttcaccaattggaaaagggtagatgtaagcaaagtaggaaacaaaatatgcatacaaattaacaatgctagactaataataa |
117 |
Q |
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| T |
33823589 |
tttatgttcttctgttctttcaccaattggaaaagggtagatgtaagcaaagaaggaaacaaaatatgcatacaaattaacaatgctagactaataataa |
33823490 |
T |
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| Q |
118 |
ttcatacaccaaagattctttcagttgaactattgactcttcacatgtacttttataagtgtccttcacatgaaatgctctatttccataattagtgtgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33823489 |
ttcatacaccaaagattctttcagttgaactattgattcttcacatgtacttttataagtgtccttcacatgaaatgctctatttccataattagtgtgg |
33823390 |
T |
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| Q |
218 |
acttattaattacaattgagcttaattaggacaattggtcgaatctcactttatagattgatgttagcatatataattaagttagagaccctgtgacact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33823389 |
acttattaattacaattgagcttaattaggacaattggtcgaatctcactttatagattgatgttagcatatataattaagttagagaccctgtgacact |
33823290 |
T |
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| Q |
318 |
gtcccc |
323 |
Q |
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|||||| |
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| T |
33823289 |
gtcccc |
33823284 |
T |
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