View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_56 (Length: 333)
Name: NF9150_low_56
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 22049765 - 22050050
Alignment:
| Q |
33 |
ttataatagcaaacaaattacatataattgatgatgacatgagatttgttacagacataatggtagatagatcgaaacttatatgacagataacatatta |
132 |
Q |
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| T |
22049765 |
ttataatactaaacaaattacatataattgatgatgacatgagatttgttacagacataatggtagatagatccaaacttatatgacagataacatatta |
22049864 |
T |
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| Q |
133 |
ttgtagttcaacacaaagatacaataattgacatagattcataacgaaatcacatttttgcaaccattataagatttgagtgattatgattgacaaatcg |
232 |
Q |
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| T |
22049865 |
ttgcacttcaacacaaagatac--taattgacatagattcataaccaaatcacatttttgcaaccattataagatttgagtgattatgattgacaaatcg |
22049962 |
T |
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| Q |
233 |
aaacttcaaaacatctccttccttacatttgttcaatagtgtaaacaaattccagtcctttccaaattcagtccatgattttttgcct |
320 |
Q |
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| T |
22049963 |
aaacttcaaaacatctccttccttacatttgttcaatagtgtaaacaaattccagtcccttccgaattcagtccatgattttttgcct |
22050050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 22059257 - 22059305
Alignment:
| Q |
199 |
ttataagatttgagtgattatgattgacaaatcgaaacttcaaaacatc |
247 |
Q |
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| T |
22059257 |
ttattagatttgaacgattatgatcgacaaatcggaacttcaaaacatc |
22059305 |
T |
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