View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9150_low_69 (Length: 286)
Name: NF9150_low_69
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9150_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 5570813 - 5571068
Alignment:
| Q |
18 |
tgaagttcttacaaaagttgataactgtaatttggaattccttatgaacatattgtcaagcatattgtaaaattttacaattgaaatcctaaggaaatgc |
117 |
Q |
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| T |
5570813 |
tgaagttcttacaaaagttgataactgtaatttggaagtccttatgaacatattgtcaagcatattgtaaaattttacaattgaaatcctaaggaaatgc |
5570912 |
T |
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| Q |
118 |
agtaaatgacagcaaataagtttcatgctaatttgatgaatcctactcggtgaattcattcaataagcagaataacaattatctagcagaaacagaactc |
217 |
Q |
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| T |
5570913 |
agtaaatgacagcaaataagtttcatgctaatttgatgaatcctacttggtgaattcattcaataagcagaataacaattatctagcagaaacagaactc |
5571012 |
T |
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| Q |
218 |
atatttgaattctatatcatattattccttaccactgatctccatcaaacacaggt |
273 |
Q |
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| T |
5571013 |
atatttgaattctatatcatattattccttaccactgatctccatcaaacacaggt |
5571068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 5578911 - 5579062
Alignment:
| Q |
75 |
aagcatattgtaaaattttacaattgaaatcctaaggaaatgcagtaaatgacagcaaataagtttcatgctaatttgatgaatcctactcggtgaattc |
174 |
Q |
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| T |
5578911 |
aagcatattgtgcaattttactattaaaatcataagggaatgcagtaatttacagcacataaattttatgctaatttaatgaatcctacttagtgagttc |
5579010 |
T |
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| Q |
175 |
attcaataagcagaataacaattatctagcagaaacagaactcatatttgaa |
226 |
Q |
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| T |
5579011 |
attcaatatgcagaataacaattatccattagaaacataactcatatttgaa |
5579062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 27755107 - 27755283
Alignment:
| Q |
22 |
gttcttacaaaagttgataactgtaatttggaattccttatgaacatattgtcaagcatattgtaaaattttacaattgaaatcctaaggaaatgcagta |
121 |
Q |
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|||||||||||| ||||||||| |||||||||| | |||| ||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
27755107 |
gttcttacaaaaattgataactataatttggaagcctttataaacatgctgtcaagcatattgtgcaattttactattgaaatcctaaggcaatgcagta |
27755206 |
T |
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| Q |
122 |
aatgacagcaaataagtttcatgctaatttgatgaatcctactcggtgaattcattcaataagcagaataacaatta |
198 |
Q |
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| T |
27755207 |
aatgacagcacataagtttcatgctaaattgatgaatcctacatggtgaattcattcaatatgcagaaaatcaatta |
27755283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 29878856 - 29878701
Alignment:
| Q |
88 |
aattttacaattgaaatcctaaggaaatgcagtaaatgacagcaaataagtttcatgctaatttgatgaatcctactcggtgaattcattcaataagcag |
187 |
Q |
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||||||||||||||||||| ||| |||| || ||| |||| || |||| | ||||||||||||||||||||||| | ||| ||||||||||||| |||| |
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| T |
29878856 |
aattttacaattgaaatcccaagccaatgaagcaaaagacatcacataaatctcatgctaatttgatgaatcctaattggtaaattcattcaatatgcag |
29878757 |
T |
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| Q |
188 |
aataacaattatctagcagaaacagaactcatatttgaattctatatcatattattc |
244 |
Q |
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|| | |||||||| |||| ||||||| ||||||||||||||| ||||||||||||| |
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| T |
29878756 |
aaaatcaattatccagcaaaaacagagttcatatttgaattct-tatcatattattc |
29878701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 24258551 - 24258650
Alignment:
| Q |
122 |
aatgacagcaaataagtttcatgctaatttgatgaatcctactcggtgaattcattcaataagcagaataacaattatctagcagaaacagaactcatat |
221 |
Q |
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| T |
24258551 |
aatgacagcacataattttcaggctaatttgatgaatcctacttggtgaattcattcaatatgcagaaaatcaattatccagcagaaacagaactcatat |
24258650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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