View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9150_low_71 (Length: 274)

Name: NF9150_low_71
Description: NF9150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9150_low_71
NF9150_low_71
[»] chr7 (3 HSPs)
chr7 (18-255)||(32715050-32715287)
chr7 (19-255)||(32718428-32718664)
chr7 (57-254)||(32709829-32710026)
[»] chr6 (3 HSPs)
chr6 (19-254)||(10379597-10379832)
chr6 (19-251)||(10411401-10411633)
chr6 (217-254)||(33450452-33450489)
[»] chr8 (3 HSPs)
chr8 (187-248)||(35018084-35018145)
chr8 (184-236)||(42991408-42991460)
chr8 (217-250)||(33811108-33811141)
[»] chr3 (2 HSPs)
chr3 (187-248)||(38214048-38214109)
chr3 (187-248)||(38218267-38218328)
[»] chr4 (1 HSPs)
chr4 (198-250)||(53488672-53488724)
[»] chr2 (2 HSPs)
chr2 (181-248)||(16942692-16942759)
chr2 (181-248)||(17013357-17013424)
[»] chr1 (1 HSPs)
chr1 (217-250)||(47495936-47495969)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 32715287 - 32715050
Alignment:
Q  18 gtaaattgtgtatttttgacgcacccatcttagcctacgccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttaccttgtgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32715287 gtaaattgtgtatttttgacgcacccatcttagcctacgccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttaccttgtgtt 32715188  T
Q  118 gcacaaaactttgcattaacagatgattcacaaccatcaatgtggaagcctttgtagcctgctatgaatggtgctttggaccaatctgttttctccaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32715187 gcacaaaactttgcattaacagatgattcacaaccatcaatgtggaagcctttgtagcctgctatgaatggtgcttttgaccaatctgttttctccaaac 32715088  T
Q  218 cacctcttgtggcccaatcatctgcattccataaactg 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32715087 cacctcttgtggcccaatcatctgcattccataaactg 32715050  T

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Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 32718664 - 32718428
Alignment:
Q  19 taaattgtgtatttttgacgcacccatcttagcctacgccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttaccttgtgttg 118  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32718664 taaatggtgtatttttggcgcacccatcttagtctacgccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttaccttgtgttg 32718565  T
Q  119 cacaaaactttgcattaacagatgattcacaaccatcaatgtggaagcctttgtagcctgctatgaatggtgctttggaccaatctgttttctccaaacc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||| ||||| || || ||    
T  32718564 cacaaaactttgcattaacagatgattcacaaccatcaatgtggaaacttttgtaacctgctatgaatggtgcttttgaccaatcagttttttctaatcc 32718465  T
Q  219 acctcttgtggcccaatcatctgcattccataaactg 255  Q
    ||| |||||||||||||||||||||||||||||||||    
T  32718464 accccttgtggcccaatcatctgcattccataaactg 32718428  T

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Target: chr7; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 57 - 254
Target Start/End: Complemental strand, 32710026 - 32709829
Alignment:
Q  57 ccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttaccttgtgttgcacaaaactttgcattaacagatgattcacaaccatca 156  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||| || |||||||| |||||||  ||||||||||||| || | |||||||||||||    
T  32710026 ccattgagcagcatcaaggtcacgaaattcaggtcgattccaccattttctaccttgttttgcacagtactttgcattaactgaggtttcacaaccatca 32709927  T
Q  157 atgtggaagcctttgtagcctgctatgaatggtgctttggaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattccataaact 254  Q
    ||||| || | |||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  32709926 atgtgaaaacttttgtaacctgctatgaatggtgctttggaccaatctgttttctctaatccacctcttgttgcccaatcatctgcattccataaact 32709829  T

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Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 10379597 - 10379832
Alignment:
Q  19 taaattgtgtatttttgacgcacccatcttagcctacgccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttaccttgtgttg 118  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||      
T  10379597 taaattgtgtatttttgacgcacccatcttagcctttgccattgagcaacatcaaggtcatgaaattcaggttgatcccaccatctttttccttgtgtgt 10379696  T
Q  119 cacaaaactttgcattaacagatgattcacaaccatcaatgtggaagcctttgtagcctgctatgaatggtgctttggaccaatctgttttctccaaacc 218  Q
    ||||||| |||||||| ||||| | |||||| |||||||| ||||| ||||||||    |||||||| |||||||||||||||||||||||||| |||||    
T  10379697 cacaaaattttgcattcacagaagcttcacacccatcaatatggaaccctttgtaagaggctatgaagggtgctttggaccaatctgttttctctaaacc 10379796  T
Q  219 acctcttgtggcccaatcatctgcattccataaact 254  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  10379797 accccttgtggcccaatcatcagcattccataaact 10379832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 10411633 - 10411401
Alignment:
Q  19 taaattgtgtatttttgacgcacccatcttagcctacgccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttaccttgtgttg 118  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||      
T  10411633 taaattgtgtatttttgacgcacccatcttagtctttgccattgagcaacatcaagatcatgaaactcaggttgatcccaccatctttttccttgtgtgt 10411534  T
Q  119 cacaaaactttgcattaacagatgattcacaaccatcaatgtggaagcctttgtagcctgctatgaatggtgctttggaccaatctgttttctccaaacc 218  Q
    ||||||| |||||||| ||||| | |||||||||||| || || || ||||||||    |||||||| ||||||||||||||||||||||||||||||||    
T  10411533 cacaaaattttgcattcacagaagcttcacaaccatcgatatgaaaccctttgtatgaggctatgaagggtgctttggaccaatctgttttctccaaacc 10411434  T
Q  219 acctcttgtggcccaatcatctgcattccataa 251  Q
    ||| ||||| ||||||||||| |||||||||||    
T  10411433 accccttgtagcccaatcatcagcattccataa 10411401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 33450489 - 33450452
Alignment:
Q  217 ccacctcttgtggcccaatcatctgcattccataaact 254  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  33450489 ccacctcttgtggcccaattatctgcattccataaact 33450452  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 35018145 - 35018084
Alignment:
Q  187 ggtgctttggaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 248  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||    
T  35018145 ggtgctttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattcca 35018084  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 42991460 - 42991408
Alignment:
Q  184 aatggtgctttggaccaatctgttttctccaaaccacctcttgtggcccaatc 236  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||    
T  42991460 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatc 42991408  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 33811108 - 33811141
Alignment:
Q  217 ccacctcttgtggcccaatcatctgcattccata 250  Q
    ||||||||||| ||||||||||||||||||||||    
T  33811108 ccacctcttgtagcccaatcatctgcattccata 33811141  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 38214048 - 38214109
Alignment:
Q  187 ggtgctttggaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 248  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||    
T  38214048 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 38214109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 38218267 - 38218328
Alignment:
Q  187 ggtgctttggaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 248  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||    
T  38218267 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 38218328  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 53488672 - 53488724
Alignment:
Q  198 ccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattccata 250  Q
    ||||||||||||| | | |||||||||||| ||||||||||| ||||||||||    
T  53488672 ccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccata 53488724  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 16942759 - 16942692
Alignment:
Q  181 atgaatggtgctttggaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 248  Q
    |||||||| || |||| ||||||||||||| | |  |||||||| |||||||||| ||||||||||||    
T  16942759 atgaatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattcca 16942692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 17013424 - 17013357
Alignment:
Q  181 atgaatggtgctttggaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 248  Q
    |||||||| || |||| ||||||||||||| | |  |||||||| |||||||||| ||||||||||||    
T  17013424 atgaatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattcca 17013357  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 47495969 - 47495936
Alignment:
Q  217 ccacctcttgtggcccaatcatctgcattccata 250  Q
    ||||||||||| ||||||||||||||||||||||    
T  47495969 ccacctcttgtagcccaatcatctgcattccata 47495936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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