View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9151_high_1 (Length: 449)
Name: NF9151_high_1
Description: NF9151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9151_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 5616806 - 5616382
Alignment:
| Q |
18 |
gtaagagctcgaatgaagcttcctgctaggcgttgattagagtcgtcgtccgagggtgttgtgttgttaaggacccaaaggatttgttgtgctagtgttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5616806 |
gtaagagctcgaatgaagcttcctgctaggcgttgattagagtcgtcgtccgagggtgttgtgttgttaaggacccaaaggatttgttgtgctagtgttg |
5616707 |
T |
|
| Q |
118 |
cattgttgctttctattgcattggcacagtgaatgagtaactgctccatgcaatcagtattgttaaagtgtagtagaggattattaggtgtgggaaattc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5616706 |
cattgttgctttctattgcattggcacagtgaatgagtaactgctccatgcaattagcattgttaaagtgtagtagaggattattaggtgtgggaaattc |
5616607 |
T |
|
| Q |
218 |
tgaacaaggactaataactacagggatttgatttttgttcatggtagggttggaaaagtgtgcgtttggtgaaaaggtggaaatgttgatgtgaattgcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5616606 |
tgaacaaggactaataactacagggatttgatttttgttcatggtagggttggaaaagtgtgcgtttggtgaaaaggtggaaatgttgatgtgaattgcg |
5616507 |
T |
|
| Q |
318 |
tcattgatagaatagagtataaaacatgagaatgagatggagcaaaaggtaggtaaaaagcacaaacattgacacaattacacggacgcttcaactcaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5616506 |
tcattgatagaatagagtataaaacattagaatgagatggagcaaaaggtaggtaaaaagcacaaacattgacacaattacacggacgcttcaactcaat |
5616407 |
T |
|
| Q |
418 |
tagtaatctaatagaatagaataat |
442 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5616406 |
tagtaatctaatagaatagaataat |
5616382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 21162093 - 21161669
Alignment:
| Q |
18 |
gtaagagctcgaatgaagcttcctgctaggcgttgattagagtcgtcgtccgagggtgttgtgttgttaaggacccaaaggatttgttgtgctagtgttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21162093 |
gtaagagctcgaatgaagcttcctgctaggcgttgattagagtcgtcgtccgagggtgttgtgttgttaaggacccaaaggatttgttgtgctagtgttg |
21161994 |
T |
|
| Q |
118 |
cattgttgctttctattgcattggcacagtgaatgagtaactgctccatgcaatcagtattgttaaagtgtagtagaggattattaggtgtgggaaattc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21161993 |
cattgttgctttctattgcattggcacagtgaatgagtaactgctccatgcaattagcattgttaaagtgtagtagaggattattaggtgtgggaaattc |
21161894 |
T |
|
| Q |
218 |
tgaacaaggactaataactacagggatttgatttttgttcatggtagggttggaaaagtgtgcgtttggtgaaaaggtggaaatgttgatgtgaattgcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21161893 |
tgaacaaggactaataactacagggatttgatttttgttcatggtagggttggaaaagtgtgcgtttggtgaaaaggtggaaatgttgatgtgaattgcg |
21161794 |
T |
|
| Q |
318 |
tcattgatagaatagagtataaaacatgagaatgagatggagcaaaaggtaggtaaaaagcacaaacattgacacaattacacggacgcttcaactcaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21161793 |
tcattgatagaatagagtataaaacattagaatgagatggagcaaaaggtaggtaaaaagcacaaacattgacacaattacacggacgcttcaactcaat |
21161694 |
T |
|
| Q |
418 |
tagtaatctaatagaatagaataat |
442 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
21161693 |
tagtaatctaatagaatagaataat |
21161669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University