View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9151_high_3 (Length: 255)

Name: NF9151_high_3
Description: NF9151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9151_high_3
NF9151_high_3
[»] chr6 (6 HSPs)
chr6 (12-251)||(30836331-30836566)
chr6 (27-163)||(21762022-21762158)
chr6 (26-136)||(826693-826803)
chr6 (27-98)||(20915996-20916067)
chr6 (27-133)||(31442517-31442623)
chr6 (212-247)||(18646111-18646146)
[»] chr5 (3 HSPs)
chr5 (27-251)||(31981793-31982012)
chr5 (27-128)||(6697935-6698036)
chr5 (66-98)||(9045162-9045194)
[»] chr8 (4 HSPs)
chr8 (27-251)||(3193031-3193244)
chr8 (24-98)||(26083900-26083974)
chr8 (27-98)||(26981035-26981106)
chr8 (212-244)||(8022885-8022917)
[»] chr3 (8 HSPs)
chr3 (27-229)||(1141744-1141943)
chr3 (27-163)||(52041318-52041454)
chr3 (27-163)||(42655773-42655909)
chr3 (27-163)||(22424304-22424440)
chr3 (27-162)||(39484743-39484879)
chr3 (26-163)||(1529164-1529302)
chr3 (27-93)||(15996384-15996449)
chr3 (27-97)||(15291461-15291530)
[»] chr4 (5 HSPs)
chr4 (34-163)||(9451249-9451378)
chr4 (27-158)||(24257703-24257835)
chr4 (27-97)||(6898752-6898822)
chr4 (25-91)||(9199510-9199576)
chr4 (27-96)||(12094856-12094925)
[»] chr2 (6 HSPs)
chr2 (27-163)||(29280085-29280221)
chr2 (27-163)||(22625320-22625457)
chr2 (27-163)||(38996454-38996590)
chr2 (34-152)||(38955785-38955903)
chr2 (32-158)||(10601238-10601362)
chr2 (27-114)||(32281486-32281573)
[»] chr1 (3 HSPs)
chr1 (25-152)||(22964005-22964132)
chr1 (38-117)||(3908809-3908888)
chr1 (27-114)||(15700721-15700808)
[»] chr7 (4 HSPs)
chr7 (27-94)||(39742297-39742364)
chr7 (28-116)||(6253382-6253470)
chr7 (27-98)||(20077341-20077412)
chr7 (66-98)||(4407816-4407848)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 30836566 - 30836331
Alignment:
Q  12 acatcacaatagatcatcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcattta 111  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  30836566 acatcacaatagatcatttttcttactaaagcttgtctgatcaagcaattgttcaccctaattttaatctaatattttccctccatcccccaagcattta 30836467  T
Q  112 attttcatgagtgctttccctactcggcaagctaagttcaatttttaaattttcttccaagcatacatagaagtgtgcttctatatatgtaccaattttg 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  30836466 attttcatgagtgctttccctactcagcaagctaagttcaatttttaaattttcttccaagcatacatagaagtgtgcttc----tatgtaccaattttg 30836371  T
Q  212 aatttgaatctcaaccatcgttaattgcatttacttcatg 251  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30836370 aatttgaatctcaaccatcgttaattgcatttacttcatg 30836331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 21762022 - 21762158
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    |||||| |||||||| |||| |||||||||| |||| ||||||||||||||| ||| ||||||||||||||| | |||  ||||||||||| | ||||||    
T  21762022 atctttcttactaaaacttgtctgatcaagctattgctcaccctaattttaacctactattttccctccatcacccaattatttaattttcgttagtgct 21762121  T
Q  127 ttccctactcggcaagctaagttcaatttttaaattt 163  Q
    || |||||||  |||||||||||||||||||||||||    
T  21762122 tttcctactcatcaagctaagttcaatttttaaattt 21762158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 826803 - 826693
Alignment:
Q  26 catcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgc 125  Q
    ||||||| |||||||| |||| ||| |||||| |||||||||| ||||||||| ||||||||||||||||||| | ||| |||||||||||| | |||||    
T  826803 catctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccatcgcccaatcatttaattttcgttagtgc 826704  T
Q  126 tttccctactc 136  Q
    ||| |||||||    
T  826703 ttttcctactc 826693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 20916067 - 20915996
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaat-tgttcaccctaattttaaactaatattttccctccatc 98  Q
    |||||| ||||||||||||| ||||||||||||| || | ||| ||||||||| |||||||||||||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgat-accttaattttaacctaatattttccctccatc 20915996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 31442517 - 31442623
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    |||||| |||||||||||||  || |||||||||     ||||||||||||| |||||||||||||||||||   |||||||| |||| || | ||||||    
T  31442517 atctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcctaagtgct 31442616  T
Q  127 ttcccta 133  Q
    || ||||    
T  31442617 tttccta 31442623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 18646111 - 18646146
Alignment:
Q  212 aatttgaatctcaaccatcgttaattgcatttactt 247  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18646111 aatttgaatctcaaccatccttaattgcatttactt 18646146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 31981793 - 31982012
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  31981793 atcttttttactaaagcttgtttgatcaagcaattgttcaacctaattttaacctaatattttccctacatcc-tcaagcatttaattttcatgagtgct 31981891  T
Q  127 ttccctactcggcaagctaagttcaatttttaaattttcttccaagcatacatagaagtgtgcttctatatatgtaccaattttgaatttgaatctcaac 226  Q
    || ||||||| |||||||||||| ||||||||||||  |||| ||||||||||||  |||||||||    ||||||||||||||||||||||||||||||    
T  31981892 tttcctactcagcaagctaagtttaatttttaaattcccttcgaagcatacataggcgtgtgcttc----tatgtaccaattttgaatttgaatctcaac 31981987  T
Q  227 catcgttaattgcatttacttcatg 251  Q
    |||||||||||||||||||||||||    
T  31981988 catcgttaattgcatttacttcatg 31982012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 6697935 - 6698036
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    |||||| |||||||| |||| ||| |||||||||     ||| ||||||||| |||||||||||||||||||   |||||||| |||| || ||||||||    
T  6697935 atctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatcatgcaagcattaaattctcttgagtgct 6698034  T
Q  127 tt 128  Q
    ||    
T  6698035 tt 6698036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 9045162 - 9045194
Alignment:
Q  66 accctaattttaaactaatattttccctccatc 98  Q
    ||||||||||||| |||||||||||||||||||    
T  9045162 accctaattttaacctaatattttccctccatc 9045194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 3193244 - 3193031
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    |||||| ||||||||||||| ||| ||||| |||| |||| | ||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||    
T  3193244 atctttcttactaaagcttgtctggtcaagtaattattcatcttaattttaacctaatattttccctccattcc-caaacatttaattttcatgagtgct 3193146  T
Q  127 ttccctactcggcaagctaagttcaatttttaaattttcttccaagcatacatagaagtgtgcttctatatatgtaccaattttgaatttgaatctcaac 226  Q
    || ||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  3193145 tttcctactcagcaagctaatttcaattttt-aattttctttcaagcatacatagaagtgtg---------atgtaccaattttgaatttgaatctcaac 3193056  T
Q  227 catcgttaattgcatttacttcatg 251  Q
    |||||||||||||||||||||||||    
T  3193055 catcgttaattgcatttacttcatg 3193031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 26083900 - 26083974
Alignment:
Q  24 atcatcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatc 98  Q
    ||||||||| ||||||||||||| ||| |||||||||     ||||||||||||| |||||||||||||||||||    
T  26083900 atcatctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatc 26083974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 26981035 - 26981106
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatc 98  Q
    |||||| |||||||||||||  ||||||||||||     ||||||||||||| |||||||||| ||||||||    
T  26981035 atctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatc 26981106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 8022885 - 8022917
Alignment:
Q  212 aatttgaatctcaaccatcgttaattgcattta 244  Q
    ||||||||||||||||||| |||||||||||||    
T  8022885 aatttgaatctcaaccatccttaattgcattta 8022917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 1141744 - 1141943
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    |||||| |||||||||||||  || |||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |    
T  1141744 atctttcttactaaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccatcccccaagcatttaattttcattagtgtt 1141843  T
Q  127 ttccctactcggcaagctaagttcaatttttaaattt-tcttccaagcatacatagaagtgtgcttctatatatgtaccaattttgaatttgaatctcaa 225  Q
    || |||||||  |||||| ||||||||||||||||||  ||||||||||||||| |   ||||||||    |||||||||||||||||||||||||||||    
T  1141844 tttcctactcaacaagctgagttcaatttttaaatttcccttccaagcatacatcggcatgtgcttc----tatgtaccaattttgaatttgaatctcaa 1141939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 52041454 - 52041318
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    |||||| ||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||  | ||||||    
T  52041454 atctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccatcacccaagcatttaattttggttagtgct 52041355  T
Q  127 ttccctactcggcaagctaagttcaatttttaaattt 163  Q
    || |||||||  |||||||||||||||||||||||||    
T  52041354 tttcctactcatcaagctaagttcaatttttaaattt 52041318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 42655773 - 42655909
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    |||||| |||| |||||||| ||| |||||| ||||||||||||||||||||  ||||||||||||| |||| | ||||||||||||||| || |||| |    
T  42655773 atctttcttaccaaagcttgtctggtcaagctattgttcaccctaattttaacataatattttcccttcatcacccaagcatttaattttgattagtgtt 42655872  T
Q  127 ttccctactcggcaagctaagttcaatttttaaattt 163  Q
    || |||||||  |||||||||||||||||||||||||    
T  42655873 tttcctactcatcaagctaagttcaatttttaaattt 42655909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 22424440 - 22424304
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    |||||| ||||||||| ||  ||| |||||| |||||||||||||||||||| ||||||||||||||||||| |  || |||||||||||  | ||| ||    
T  22424440 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacctaaacatttaatttttgttagtact 22424341  T
Q  127 ttccctactcggcaagctaagttcaatttttaaattt 163  Q
    || |||||||   |||||||||| ||||||| |||||    
T  22424340 tttcctactcattaagctaagttgaatttttgaattt 22424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 39484879 - 39484743
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaat-tgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgc 125  Q
    |||||| |||||||||||||  || |||||| || ||||||||||| |||||| ||||||||||||||||||| | ||| ||||||||||| || | |||    
T  39484879 atctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaaacatttaattttaattaatgc 39484780  T
Q  126 tttccctactcggcaagctaagttcaatttttaaatt 162  Q
    ||| |||||||  |   ||||||||||||||||||||    
T  39484779 ttttcctactcatctttctaagttcaatttttaaatt 39484743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 1529164 - 1529302
Alignment:
Q  26 catcttttttactaaagcttgcctgatcaagcaattgttcaccctaatt-ttaaactaatattttccctccatccctcaagcatttaattttcatgagtg 124  Q
    ||||||| |||||||||||||  || |||||| |||  | ||||||||| |||| ||||| |||||||||||||   |||||| |||||| || | | ||    
T  1529164 catctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccatcatacaagcaattaattctcgttaatg 1529263  T
Q  125 ctttccctactcggcaagctaagttcaatttttaaattt 163  Q
     ||| |||||||  ||| |||||||||| ||||||||||    
T  1529264 tttttcctactcatcaaactaagttcaaattttaaattt 1529302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 15996449 - 15996384
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccct 93  Q
    |||||| ||||||||||||| |||||||||| |||||| ||||||||| ||| ||||| ||||||||    
T  15996449 atctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaat-ttttccct 15996384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 15291461 - 15291530
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccat 97  Q
    |||||| |||||||||||||  || |||||| |||||| |||||||| |||| ||||| ||||||||||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccat 15291530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 9451249 - 9451378
Alignment:
Q  34 ttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttcccta 133  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| | |||||||| | ||    
T  9451249 ttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaagcatttaattttcgttagtgcttttcgta 9451348  T
Q  134 ctcggcaagctaagttcaatttttaaattt 163  Q
    |||  |||||||||||||||||||||||||    
T  9451349 ctcatcaagctaagttcaatttttaaattt 9451378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 24257703 - 24257835
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagca-tttaattttcatgagtgc 125  Q
    |||||| |||||||||||||  || ||||||||||||||||||||||||||| |||||||||| |||||||| |  ||||| ||||||| |  |  ||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccatcacctaagcattttaattgtagttggtgc 24257802  T
Q  126 tttccctactcggcaagctaagttcaattttta 158  Q
    ||| |||| ||  ||| ||||||||||||||||    
T  24257803 ttttcctaatcatcaaactaagttcaattttta 24257835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 6898822 - 6898752
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccat 97  Q
    |||||| |||||||||||||  ||||||||| |||| | |||||||| |||| |||||||||||| |||||    
T  6898822 atctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccat 6898752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 9199510 - 9199576
Alignment:
Q  25 tcatcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttcc 91  Q
    |||||||| ||||||||||||| ||| |||||||||     ||||||||||||| ||||||||||||    
T  9199510 tcatctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttcc 9199576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 12094925 - 12094856
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctcca 96  Q
    |||||| |||||||||||||  || |||||| |||    ||||||||||||| |||||||||||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 29280085 - 29280221
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgct 126  Q
    |||||| |||||||| |||| ||||| |||| |||||||||||||||||||| ||||||||||||||| ||| |  |||||| |||||||| | ||||||    
T  29280085 atctttcttactaaaacttgtctgatgaagctattgttcaccctaattttaacctaatattttccctcaatcacctaagcatgtaattttcgttagtgct 29280184  T
Q  127 ttccctactcggcaagctaagttcaatttttaaattt 163  Q
    || | |||||  |||||||||||||||||||||||||    
T  29280185 tttcgtactcatcaagctaagttcaatttttaaattt 29280221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 22625457 - 22625320
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaatttt---catgagt 123  Q
    |||||| |||||||| |||| ||| |||||||||||   ||||||||||||| ||||||||||||||||||| | | | |||||||||||   ||| |||    
T  22625457 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacat-agt 22625359  T
Q  124 gctttccctactcggcaagctaagttcaatttttaaattt 163  Q
    ||||| ||||||| ||||| | ||||||||||||||||||    
T  22625358 gcttt-cctactcagcaagttgagttcaatttttaaattt 22625320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 38996590 - 38996454
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaat-tgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgc 125  Q
    |||||| ||||||||||||| |||||||||| || |||| ||||||||||||| |||||||||||||||||||   ||| ||||||||| |  | ||||     
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgtt-accctaattttaacctaatattttccctccatcaaacaaacatttaattctgcttagtgt 38996492  T
Q  126 tttccctactcggcaagctaagttcaatttttaaattt 163  Q
    ||| |||||||  |||| ||||||||| ||||||||||    
T  38996491 ttttcctactcatcaagttaagttcaaattttaaattt 38996454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 38955903 - 38955785
Alignment:
Q  34 ttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttcccta 133  Q
    ||||||||||||  |||||||| | |||| | ||||||||| ||| ||||||||||||||||||| | |||||||||||||||  | | |||||| ||||    
T  38955903 ttactaaagcttatctgatcaaactattgataaccctaattctaacctaatattttccctccatcacccaagcatttaatttttgttaatgcttttccta 38955804  T
Q  134 ctcggcaagctaagttcaa 152  Q
    ||| ||||| |||| ||||    
T  38955803 ctcagcaaggtaagctcaa 38955785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 10601362 - 10601238
Alignment:
Q  32 ttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccc 131  Q
    ||||||||||||||| ||  ||||||||||||| | ||||||| |||  |||| ||||||| ||||| |  ||||||||||||||  | |||| ||| ||    
T  10601362 ttttactaaagcttgtcttgtcaagcaattgtttaacctaattctaacataatcttttccc-ccatcacctaagcatttaatttttgttagtg-ttttcc 10601265  T
Q  132 tactcggcaagctaagttcaattttta 158  Q
    ||||| |||| ||||||||||||||||    
T  10601264 tactcagcaatctaagttcaattttta 10601238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 32281486 - 32281573
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaatt 114  Q
    |||||| ||||||||| |||  || |||||| |||  | ||||||||||||| ||| ||||||||||||||||  |||||||| ||||    
T  32281486 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaatt 32281573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 22964005 - 22964132
Alignment:
Q  25 tcatcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtg 124  Q
    |||||||  ||||||||||||| ||| |||||| |||| | ||||||||| ||| |||||||||||||||||||   |||||||||||||||  | ||||    
T  22964005 tcatcttacttactaaagcttgtctggtcaagctattggtaaccctaattctaacctaatattttccctccatcaaccaagcatttaatttttgttagtg 22964104  T
Q  125 ctttccctactcggcaagctaagttcaa 152  Q
    |||| ||||||| ||||| |||| ||||    
T  22964105 cttttcctactcagcaaggtaagctcaa 22964132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 3908888 - 3908809
Alignment:
Q  38 taaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttc 117  Q
    ||||||||| |||||||||| |||| | ||||||||||||| ||| |||||||||| ||||   ||| ||||||||||||    
T  3908888 taaagcttgtctgatcaagctattggtaaccctaattttaacctactattttcccttcatcatccaaacatttaattttc 3908809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 15700721 - 15700808
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaatt 114  Q
    |||||| ||||||||| |||  || |||||| |||  | ||||||||||||| ||| ||||||||||||||||  |||||||| ||||    
T  15700721 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaatt 15700808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 39742364 - 39742297
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctc 94  Q
    |||||| |||||||||||||  ||||||||| |||| | |||||||| |||| |||||||||||||||    
T  39742364 atctttcttactaaagcttgtttgatcaagctattgataaccctaatcttaacctaatattttccctc 39742297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 6253382 - 6253470
Alignment:
Q  28 tcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaatttt 116  Q
    ||||| |||||||||||||  | |||||||||||||| | ||||||| ||| ||||  ||||||||||||| |  || |||||||||||    
T  6253382 tctttcttactaaagcttgtttaatcaagcaattgtttaacctaattctaacctaaatttttccctccatcacctaaacatttaatttt 6253470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 20077412 - 20077341
Alignment:
Q  27 atcttttttactaaagcttgcctgatcaagcaattgttcaccctaattttaaactaatattttccctccatc 98  Q
    |||||| |||||||||||||  || |||||||||     ||||||||||||| |||||||||||||||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatc 20077341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 4407816 - 4407848
Alignment:
Q  66 accctaattttaaactaatattttccctccatc 98  Q
    ||||||||||||| |||||||||||||||||||    
T  4407816 accctaattttaacctaatattttccctccatc 4407848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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