View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9151_low_3 (Length: 393)

Name: NF9151_low_3
Description: NF9151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9151_low_3
NF9151_low_3
[»] chr1 (7 HSPs)
chr1 (17-135)||(4449389-4449508)
chr1 (196-370)||(4449635-4449810)
chr1 (195-266)||(9826456-9826527)
chr1 (195-266)||(31279279-31279350)
chr1 (195-266)||(9812060-9812131)
chr1 (132-185)||(4449553-4449606)
chr1 (195-264)||(9751437-9751505)
[»] chr6 (7 HSPs)
chr6 (195-266)||(24977772-24977843)
chr6 (195-266)||(12770774-12770845)
chr6 (195-266)||(24976341-24976412)
chr6 (196-266)||(12766760-12766830)
chr6 (196-266)||(3894855-3894925)
chr6 (195-266)||(12800106-12800177)
chr6 (213-266)||(12777047-12777100)
[»] chr5 (1 HSPs)
chr5 (195-266)||(40235004-40235075)
[»] chr4 (2 HSPs)
chr4 (195-266)||(28745642-28745713)
chr4 (195-266)||(39936156-39936227)
[»] chr3 (7 HSPs)
chr3 (195-266)||(20204894-20204965)
chr3 (195-266)||(24835072-24835143)
chr3 (196-266)||(16724876-16724946)
chr3 (196-266)||(18177746-18177816)
chr3 (195-262)||(22261741-22261808)
chr3 (195-262)||(22266691-22266758)
chr3 (196-263)||(35269852-35269919)
[»] chr2 (3 HSPs)
chr2 (195-266)||(14106067-14106138)
chr2 (195-266)||(43822045-43822116)
chr2 (195-266)||(44909800-44909871)
[»] scaffold0432 (1 HSPs)
scaffold0432 (195-266)||(5822-5893)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 4449389 - 4449508
Alignment:
Q  17 actattcaaccattactgagataa-gtttcaatgacatagaagaatatgtgatgctacaagaaaactcttgcaaagataataaagactttcattatcttg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||    
T  4449389 actattcaaccattactgagataatgtttcaatgacatagaagaatatgtgatgctacaagaaaactcttgcaaagagaataaagaatttcattattttg 4449488  T
Q  116 aagtcattctatactttttg 135  Q
    ||| ||||||||||||||||    
T  4449489 aagccattctatactttttg 4449508  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 196 - 370
Target Start/End: Original strand, 4449635 - 4449810
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgannnnnnnnnnnnnnngt-ttcaatctaat 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                | |||||| ||||    
T  4449635 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttcatattttttttttcttcaatttaat 4449734  T
Q  295 atatgattcttnnnnnnnctgctaacaaatacgaatgaattgggtttgggcttatacaatccggcccgttaaaaac 370  Q
    |||| ||||||       ||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  4449735 atatcattcttaaagaaactgctaataaataagaatgaattgggtttgggcttatacaattcggcccgttaaaaac 4449810  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 9826456 - 9826527
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9826456 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 9826527  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 31279279 - 31279350
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279279 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 31279350  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 9812060 - 9812131
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9812060 ttatcagagcctggttttaatccagggacctatgggttatgggcccaccacgcttccgctgcgccactctga 9812131  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 4449553 - 4449606
Alignment:
Q  132 tttggtgcataagtatgtccgaaatgagacgcgataattgtttgccgtttaata 185  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  4449553 tttggtgcataagtttgtccgaaatgagacgcgataattgtttgccgttcaata 4449606  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 9751437 - 9751505
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactct 264  Q
    |||| |||| ||| |||||||||||||| ||||| ||||| | |||||||||||||| ||||||||||||    
T  9751437 ttattagagtctgatttcgatccagggatctgtgagttatagacccaccacgcttcc-ctgcgccactct 9751505  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 24977772 - 24977843
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24977772 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 24977843  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 12770774 - 12770845
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12770774 ttatcagagcctggtttcaatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 12770845  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 24976341 - 24976412
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24976341 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 24976412  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 12766760 - 12766830
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  12766760 tatcagagcctggtttcgatccagggacctatgggttatgggcccaccatgcttccgctgcgccactctga 12766830  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 3894855 - 3894925
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3894855 tatcagagtctggtttctatccaaggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 3894925  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 12800106 - 12800177
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||    
T  12800106 ttattagagcctggtttcgatccagggacctgtaggttatgggcccaccacgcttccgccgcaccactctga 12800177  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 12777047 - 12777100
Alignment:
Q  213 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12777047 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 12777100  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 40235004 - 40235075
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40235004 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 40235075  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 28745642 - 28745713
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28745642 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 28745713  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 39936227 - 39936156
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39936227 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 39936156  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 20204965 - 20204894
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20204965 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 20204894  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 24835072 - 24835143
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835072 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 24835143  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 16724876 - 16724946
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16724876 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 16724946  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 18177746 - 18177816
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18177746 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 18177816  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 22261808 - 22261741
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccact 262  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22261808 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccact 22261741  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 22266691 - 22266758
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccact 262  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22266691 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccact 22266758  T

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Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 35269852 - 35269919
Alignment:
Q  196 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35269852 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgtgccactc 35269919  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 14106067 - 14106138
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14106067 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 14106138  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 43822116 - 43822045
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43822116 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 43822045  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 44909871 - 44909800
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44909871 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 44909800  T

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Target: scaffold0432 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 5822 - 5893
Alignment:
Q  195 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctga 266  Q
    |||| ||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||    
T  5822 ttattagagcctagtttcgatccaggaacctatgggttatggacccaccacgcttccgctgcgtcactctga 5893  T

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