View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9151_low_8 (Length: 218)
Name: NF9151_low_8
Description: NF9151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9151_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 19125498 - 19125708
Alignment:
| Q |
1 |
aaaatcactcatatgttcatttttcatctgcttctccccgccgcagctgcccgatctcccattcgaactggtcgcagagattctgtgcaggcttcccgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19125498 |
aaaatcactcatatgttcatttttcatctgcttctccccgccgcagctgcccgatctcccattcgaactggtcgcagagattctgtgcaggcttcccgtg |
19125597 |
T |
|
| Q |
101 |
aagctcctcgtacaacttcgatgtcagagtaagtccctcaataccctaatttctgatcccatcttcgtgaagaaacaccttcgcctatcaacgaagagcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19125598 |
aagctcctcgtacaacttcgatgtcagagtaagtccctcaataccctaatttctgatcccatcttcgtgaagaaacaccttcgcctatcaacgaagagcc |
19125697 |
T |
|
| Q |
201 |
accaccaccaa |
211 |
Q |
| |
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||||||||||| |
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| T |
19125698 |
accaccaccaa |
19125708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 19118189 - 19118399
Alignment:
| Q |
1 |
aaaatcactcatatgttcatttttcatctgcttctccccgccgcagctgcccgatctcccattcgaactggtcgcagagattctgtgcaggcttcccgtg |
100 |
Q |
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|
|||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
19118189 |
aaaatcactcttatgttcacttttcatctgcttctccccaccgccgctgcccgatctcccgttcgaactggtggcagagattctgtgcaggcttcccgtg |
19118288 |
T |
|
| Q |
101 |
aagctcctcgtacaacttcgatgtcagagtaagtccctcaataccctaatttctgatcccatcttcgtgaagaaacaccttcgcctatcaacgaagagcc |
200 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
19118289 |
aagctcctcatacaacttcgatgtcaaagtaagtccctcaataccctaatttccgatcccaaattcgcaaagaaacaccttcgcctatcaacaaagagcc |
19118388 |
T |
|
| Q |
201 |
accaccaccaa |
211 |
Q |
| |
|
||||||||||| |
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| T |
19118389 |
accaccaccaa |
19118399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 17367583 - 17367662
Alignment:
| Q |
80 |
attctgtgcaggcttcccgtgaagctcctcgtacaacttcgatgtcagagtaagtccctcaataccctaatttctgatcc |
159 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||| |
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| T |
17367583 |
attctgtgtaggcttcccgtcaagctcctcatacaacttcgatgtttaagtaagtctttcaatgacctaatttctgatcc |
17367662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 17361276 - 17361350
Alignment:
| Q |
80 |
attctgtgcaggcttcccgtgaagctcctcgtacaacttcgatgtcagagtaagtccctcaataccctaatttct |
154 |
Q |
| |
|
|||||||| |||||||| || ||||||||| | ||||||||||| || ||||||||| | ||||| || |||||| |
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|
| T |
17361276 |
attctgtgtaggcttccagtcaagctcctctttcaacttcgatgccaaagtaagtcctttaatactctcatttct |
17361350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 23231853 - 23231708
Alignment:
| Q |
46 |
gctgcccgatctcccattcgaactggtcgcagagattctgtgcaggcttcccgtgaagctcctcgtacaacttcgatgtcagagtaagtccctcaatacc |
145 |
Q |
| |
|
|||||| |||||||| ||||| |||| ||||||||||| ||||| ||||| || ||||||||| ||||||||||||||| ||||||||| |||||||| |
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| T |
23231853 |
gctgccggatctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgtctcagtaagtccttcaatacc |
23231754 |
T |
|
| Q |
146 |
ctaatttctgatcccatcttcgtgaagaaacaccttcgcctatcaa |
191 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||||| |||||| |
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| T |
23231753 |
ctaatctctgatcccaatttcgcaaagaaacaccttcgcttatcaa |
23231708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 23235745 - 23235599
Alignment:
| Q |
46 |
gctgcccgatctcccattcgaactggtcgcagagattctgtgcaggcttcccgtgaagctcctcgtacaacttcgatgtcagagtaagtccctcaatacc |
145 |
Q |
| |
|
|||||| |||||||| ||||| |||| ||||||||||| ||||| ||||| || ||||||||| ||||||||||||| | ||||||||| |||||| | |
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| T |
23235745 |
gctgccggatctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataac |
23235646 |
T |
|
| Q |
146 |
ctaatttctgatcccatcttcgtgaagaaacaccttcgcctatcaac |
192 |
Q |
| |
|
|| ||||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
23235645 |
ctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaac |
23235599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 23226531 - 23226407
Alignment:
| Q |
37 |
cccgccgcagctgcccgatctcccattcgaactggtcgcagagattctgtgcaggcttcccgtgaagctcctcgtacaacttcgatgtcagagtaagtcc |
136 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| || || |||||||||| || ||||| ||||| ||| ||||| ||||||||||||||| ||| ||||| |
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| T |
23226531 |
cccgccaccgctgcccgatctcccactcgaattgatctcagagattctatgtaggctccccgtcaagatcctcttacaacttcgatgtctcagttagtcc |
23226432 |
T |
|
| Q |
137 |
ctcaataccctaatttctgatccca |
161 |
Q |
| |
|
| |||| ||||||||||||||||| |
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|
| T |
23226431 |
ttgaatatcctaatttctgatccca |
23226407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 23196200 - 23196336
Alignment:
| Q |
56 |
ctcccattcgaactggtcgcagagattctgtgcaggcttcccgtgaagctcctcgtacaacttcgatgtcagagtaagtccctcaataccctaatttctg |
155 |
Q |
| |
|
||||| |||||||| || ||||||||||| |||||||| || || | | ||||| ||||||| ||||| | ||||||| | |||||||||| ||||||| |
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|
| T |
23196200 |
ctcccgttcgaactagtggcagagattctatgcaggctccctgtcatgttcctcctacaactacgatgcctcagtaagttcttcaatacccttatttctg |
23196299 |
T |
|
| Q |
156 |
atcccatcttcgtgaagaaacaccttcgcctatcaac |
192 |
Q |
| |
|
|||| | |||| ||||||||||||||| ||||||| |
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|
| T |
23196300 |
atccaaagttcgctaagaaacaccttcgcttatcaac |
23196336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 23240260 - 23240196
Alignment:
| Q |
128 |
agtaagtccctcaataccctaatttctgatcccatcttcgtgaagaaacaccttcgcctatcaac |
192 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |
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| T |
23240260 |
agtaagtccttcaataccctaatttctgatccttatttcgttaagaaacaccttcgcttatcaac |
23240196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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