View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9152_low_1 (Length: 775)
Name: NF9152_low_1
Description: NF9152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9152_low_1 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 57 - 766
Target Start/End: Original strand, 75129 - 75838
Alignment:
| Q |
57 |
tgtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactt |
156 |
Q |
| |
|
|||||||| || |||||||||||||| ||| |||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
75129 |
tgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactt |
75228 |
T |
|
| Q |
157 |
tgggttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtg |
256 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
75229 |
tggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtg |
75328 |
T |
|
| Q |
257 |
ttacgctcgggatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattatttt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
75329 |
ttacgctcgggatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattatttt |
75428 |
T |
|
| Q |
357 |
atgatagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcagtct |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75429 |
atgatagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcagtct |
75528 |
T |
|
| Q |
457 |
tttataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatagttaatgtgac |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75529 |
tttataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatagttaatgtgac |
75628 |
T |
|
| Q |
557 |
tcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgcannnnnnnnnaaatgtttggtagaaaa |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
75629 |
tcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgcatttttttttaaatgtttggtagaaaa |
75728 |
T |
|
| Q |
657 |
atataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75729 |
atataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
75828 |
T |
|
| Q |
757 |
acaggttctg |
766 |
Q |
| |
|
||| |||||| |
|
|
| T |
75829 |
acatgttctg |
75838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 29471905 - 29472125
Alignment:
| Q |
17 |
ttctataggcatggtgaaaataaacgtttatcaccagaagtgtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |
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|
| T |
29471905 |
ttctataggcatggtgaaaataaacgtttatcaccagaagtgtatcatctacatctttttcatatgcaaatggaaaaattgaataataatatggacaaag |
29472004 |
T |
|
| Q |
117 |
cacttttagaaaataagtggaaccatgcagaggttgactttgggttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaagga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |
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|
| T |
29472005 |
cacttttagaaaataagtggaaccatgcagaggttgactttgggttcccattcatgtatagtggaatccatgtattgaaaaagaaaagtaacatgaagga |
29472104 |
T |
|
| Q |
217 |
tattcgattcaccaacccaga |
237 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
29472105 |
tattcaattcaccaacccaga |
29472125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 59 - 303
Target Start/End: Complemental strand, 29689317 - 29689073
Alignment:
| Q |
59 |
tatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactttg |
158 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||| | ||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29689317 |
tatcatttgcatctttttcatatgcaagtggaatacttcaatggtaatatggataaagcacttttagaaaataaatggaaccatgcagaggttgactttg |
29689218 |
T |
|
| Q |
159 |
ggttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgtt |
258 |
Q |
| |
|
| ||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
29689217 |
gattcccattcatgtttagtggaatccatgtattgaaagagaagagtaacatgaaggatattagattcaccaatccagagaatgatgctaacattgtgtt |
29689118 |
T |
|
| Q |
259 |
acgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
303 |
Q |
| |
|
|| |||||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
29689117 |
acactcgggattttgaagtaagtatatcattcattttacccaaat |
29689073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 57 - 251
Target Start/End: Complemental strand, 29767295 - 29767101
Alignment:
| Q |
57 |
tgtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactt |
156 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29767295 |
tgtatcatttgcatctttttcatatgcaaatggaatacttcaatgataatatggacaaggcacttttagaaaataaatggaaccatgcagaggttgactt |
29767196 |
T |
|
| Q |
157 |
tgggttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaaca |
251 |
Q |
| |
|
||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
29767195 |
tggattcccattcatgtttagtggaatccatgtattgaaagagaaaagtagcatgaaagatattcgattcaccaacccagagaatgatgctaaca |
29767101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 57 - 297
Target Start/End: Complemental strand, 29718502 - 29718259
Alignment:
| Q |
57 |
tgtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactt |
156 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | || |
|
|
| T |
29718502 |
tgtatcatttgcatctttttcatatgcaaacggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagagatttattt |
29718403 |
T |
|
| Q |
157 |
tgggttccc---attcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacatt |
253 |
Q |
| |
|
||| || | |||||||||||||||| ||||| |||||||||| |||| ||||||| |||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
29718402 |
tggtgtctctgcattcatgtatagtggagtccatgtattgaaagaaaaaaatagcatggaggatattcgattcaccaacccagcgaatgatgctaacatt |
29718303 |
T |
|
| Q |
254 |
gtgttacgctcgggatgttgaagtaagcatatcattcattttac |
297 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29718302 |
gtgttacactcgggatgttgaagtaagtatatcattcattttac |
29718259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 58 - 254
Target Start/End: Complemental strand, 29662863 - 29662668
Alignment:
| Q |
58 |
gtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgacttt |
157 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29662863 |
gtatcatttacatctttttcatatgcaaactgaaaaattcaatgatgatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgacttt |
29662764 |
T |
|
| Q |
158 |
gggttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattg |
254 |
Q |
| |
|
|| ||||||||| | || ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
29662763 |
ggattcccattccagaat-gtggaatccatgtattgaaagagaaaagtaacatgaatgatattcgattcaccaacccagagaatgatgctaatattg |
29662668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 68 - 292
Target Start/End: Complemental strand, 29711865 - 29711646
Alignment:
| Q |
68 |
catctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactttgggttcccat |
167 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
29711865 |
catctttttcatttgcaaatggaaaatttcaatgataatatagacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggattccctt |
29711766 |
T |
|
| Q |
168 |
tcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcggg |
267 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||| |||||| || |||| |||||||| |||| | |||| ||||||||||||| |||||| |
|
|
| T |
29711765 |
tccagaatagtggaatccatgtattgaaagagaaaagtaacatgaaagacattcaattcacca-----gagaatgatgccaacattgtgttacactcggg |
29711671 |
T |
|
| Q |
268 |
atgttgaagtaagcatatcattcat |
292 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
29711670 |
atgttgaagtaagtatatcattcat |
29711646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 58 - 303
Target Start/End: Complemental strand, 29800020 - 29799774
Alignment:
| Q |
58 |
gtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgacttt |
157 |
Q |
| |
|
||||||| | |||||||| |||||||||| |||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
29800020 |
gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt |
29799921 |
T |
|
| Q |
158 |
gggttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagacta-atgctaacattgtg |
256 |
Q |
| |
|
|| ||| |||| | |||||||||||| ||||||||| ||||||| |||||||||||||||||||| | |||||| || | |||||||||||||| |
|
|
| T |
29799920 |
ggattcaaattccataaaagtggaatccatgtattgaaagctaaaagtaacatgaaggatattcgattcagcgacccagggagttgatgctaacattgtg |
29799821 |
T |
|
| Q |
257 |
ttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
303 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
29799820 |
ttacactcgggatgttgtagtaagtatatcattcattttacccaaat |
29799774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 58 - 303
Target Start/End: Complemental strand, 28487608 - 28487361
Alignment:
| Q |
58 |
gtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgacttt |
157 |
Q |
| |
|
||||||| | |||||||| |||||||||| |||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
28487608 |
gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt |
28487509 |
T |
|
| Q |
158 |
gggttcccattcatgtatagtggaatccatatattgaaagag-aaaagtagcatgaaggatattcgattcaccaacccagagacta-atgctaacattgt |
255 |
Q |
| |
|
|| ||| |||| | |||||||||||| |||||||||| ||||||| |||||||||||||||||||| | |||||| || | ||||||||||||| |
|
|
| T |
28487508 |
ggattcaaattccataaaagtggaatccatgtattgaaagactaaaagtaacatgaaggatattcgattcagcgacccagggagttgatgctaacattgt |
28487409 |
T |
|
| Q |
256 |
gttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
303 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
28487408 |
gttacactcgggatgttgtagtaagtatatcattcattttacccaaat |
28487361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 59 - 306
Target Start/End: Complemental strand, 29755789 - 29755546
Alignment:
| Q |
59 |
tatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactttg |
158 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
29755789 |
tatcatttgcatctttttcatatgcaaatggaaaacttcaatgataatatggacaaagcactttcagaaaataagtggaaccatgcggaggttctctttg |
29755690 |
T |
|
| Q |
159 |
ggttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgtt |
258 |
Q |
| |
|
| ||| |||| | | |||||||||||| ||||||||||||||| || | |||||||||||||||||||||| ||||||| | ||||||||||||| | |
|
|
| T |
29755689 |
gattcaaattccttaaaagtggaatccatgtattgaaagagaaaattaacttgaaggatattcgattcaccaatccagagaatgatgctaacattgtaat |
29755590 |
T |
|
| Q |
259 |
acgctcgggatgttgaagtaagcatatcattcattttacgcaaattgt |
306 |
Q |
| |
|
| ||||| | ||||||||| ||||||||||||| || |||||||| |
|
|
| T |
29755589 |
-cactcgg---ggtgaagtaagtatatcattcatttgacccaaattgt |
29755546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 57 - 302
Target Start/End: Complemental strand, 29671427 - 29671188
Alignment:
| Q |
57 |
tgtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactt |
156 |
Q |
| |
|
|||||||| | ||||||||||||||| |||||||||| || |||||||||||||| | || |||||| ||||||| ||||||||||||||||||||| || |
|
|
| T |
29671427 |
tgtatcatttgcatctttttcatatgaaaatggaaaactttaatgataatatggaaaaagtactttttgaaaatatgtggaaccatgcagaggttgattt |
29671328 |
T |
|
| Q |
157 |
tgggttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtg |
256 |
Q |
| |
|
||| || |||||| | | |||||||| ||| ||| |||||||||||||| ||||||||||||| |||||||||| |||||| | | | || | |
|
|
| T |
29671327 |
tggattaccattccagaaaagtggaattcatgtatcgaaagagaaaagtaacatgaaggatattagattcaccaatccagag------gttgattttatt |
29671234 |
T |
|
| Q |
257 |
ttacgctcgggatgttgaagtaagcatatcattcattttacgcaaa |
302 |
Q |
| |
|
|||| || |||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
29671233 |
ttactctagggatgttgaagtaagtatatcattcattttacccaaa |
29671188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 29741397 - 29741318
Alignment:
| Q |
122 |
ttagaaaataagtggaaccatgcagaggttgactttgggttcccattcatgtatagtggaatccatatattgaaagagaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
29741397 |
ttagaaaataagtggaaccatgcagaggttgactttggattcccgttcatgtatagcggaatccatgtattgaaagagaa |
29741318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 192 - 397
Target Start/End: Complemental strand, 29704953 - 29704744
Alignment:
| Q |
192 |
tgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaa----tgctaac-attgtgttacgctcgggatgttgaagtaagcatatc |
286 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||||||| | | | ||||||| |||||||||| | |||||||||||||| ||||| |
|
|
| T |
29704953 |
tgaaagagaaaagtaacatgaaggatatttgattcagtaacccagaaaattaacgatgctaaccattgtgttacagccaagatgttgaagtaagtatatc |
29704854 |
T |
|
| Q |
287 |
attcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattattttatgatagtttttaccatgtgttcacaatta |
386 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||| |||| || | | || || |||||||||||| ||||||||||||| | || | ||||||||||||||| |
|
|
| T |
29704853 |
attcattttacg-aaattgtcataaatcttgcttcctgtaatgtaaaaaattaatttgtttcactattttatgatagatctttctatgtgttcacaatta |
29704755 |
T |
|
| Q |
387 |
taggctggact |
397 |
Q |
| |
|
|||| |||||| |
|
|
| T |
29704754 |
taggttggact |
29704744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 669 - 756
Target Start/End: Complemental strand, 28484766 - 28484679
Alignment:
| Q |
669 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
756 |
Q |
| |
|
||||||||||| |||||||||||||| | || || |||||||| || |||||||| || ||| ||||||||||| ||||||||||| |
|
|
| T |
28484766 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
28484679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 682 - 765
Target Start/End: Complemental strand, 29715238 - 29715155
Alignment:
| Q |
682 |
tttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
765 |
Q |
| |
|
|||||||||||||| |||| || |||||||| || |||||||| || ||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
29715238 |
tttctttctagattgacgataataaagggatatactaactgcacttcattcattttgtattttcttactattctcccatgttct |
29715155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 669 - 756
Target Start/End: Complemental strand, 29797178 - 29797091
Alignment:
| Q |
669 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
756 |
Q |
| |
|
||||||||||| |||||||||||||| | || || |||||||| || |||||||| || ||| ||||||||||| ||||||||||| |
|
|
| T |
29797178 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
29797091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 750
Target Start/End: Complemental strand, 28500489 - 28500408
Alignment:
| Q |
669 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
750 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| ||||||||||||| ||||| || || ||| ||||||||||| ||||| |
|
|
| T |
28500489 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
28500408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 700 - 765
Target Start/End: Complemental strand, 29708079 - 29708014
Alignment:
| Q |
700 |
acaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
765 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||| ||||||||||| ||| |||||||||| ||||| |
|
|
| T |
29708079 |
acaagaaatggatttactaactgcactttattcattttgtattttcttagtattctcacatgttct |
29708014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 750
Target Start/End: Complemental strand, 29812900 - 29812819
Alignment:
| Q |
669 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
750 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| ||||||||||||| ||||| || || ||| ||||||||||| ||||| |
|
|
| T |
29812900 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
29812819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 3e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 68 - 362
Target Start/End: Original strand, 618870 - 619164
Alignment:
| Q |
68 |
catctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactttgggttcccat |
167 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
618870 |
catctttttcatatgcaaatgaagtacttcaatgataatatggacaaagcacttttagaaaataagtggaatcatgcagaggttgactttggattcccat |
618969 |
T |
|
| Q |
168 |
tcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcggg |
267 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||| |||||||||| | |||||||||||||||||| | |||| |
|
|
| T |
618970 |
tcatgtatagtggaatccatgtattggaagagaaaagtaacatgaaagatattcgattcagtaacccagagattgatgctaacattgtgttacacccggg |
619069 |
T |
|
| Q |
268 |
atgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattattttatgata |
362 |
Q |
| |
|
||||| ||||||| | |||||||||||||| |||||||| | ||||||||||||||| ||| ||||||| |||||||||| || ||||| ||||| |
|
|
| T |
619070 |
atgttaaagtaagtacatcattcattttacccaaattgtcataaagctttcttcttgtagtgtagaatgttaatttgtttaataattttttgata |
619164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 6e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 57 - 303
Target Start/End: Original strand, 12592389 - 12592638
Alignment:
| Q |
57 |
tgtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactt |
156 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
12592389 |
tgtatcatttgcatctttttcatatgcaaatggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagaggtttattt |
12592488 |
T |
|
| Q |
157 |
tgggttccc---attcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacatt |
253 |
Q |
| |
|
||| || | |||||||||||||||||||||| |||||||||| |||| | |||| |||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
12592489 |
tggtgtctctgcattcatgtatagtggaatccatgtattgaaagataaaaacaacatggaggatattcgattcaccaacccagcgagtgatgctaacatt |
12592588 |
T |
|
| Q |
254 |
gtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
303 |
Q |
| |
|
||||||| ||||| ||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
12592589 |
gtgttacactcggaatgttaaagtaagtatatcattcattttacccaaat |
12592638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 57 - 235
Target Start/End: Complemental strand, 208796 - 208618
Alignment:
| Q |
57 |
tgtatcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactt |
156 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |||||||| |||||||||| |||||| | ||||||||||||||| ||||||||| |||| || |
|
|
| T |
208796 |
tgtatcatttgcatctttttcatatgcaaatggaaaacttcaatgaaaatatggacaaagcactctcagaaaataagtggaatcatgcagagcttgattt |
208697 |
T |
|
| Q |
157 |
tgggttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaaccca |
235 |
Q |
| |
|
||| || ||||| || | |||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
208696 |
tggactctcattcctggaaagtggaatccatgtattgaaagagagaagtagcatgaacgatattcgattcatcaaccca |
208618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 478
Target Start/End: Complemental strand, 235972 - 235903
Alignment:
| Q |
409 |
atgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcagtcttttataaaatcaacccaaacaa |
478 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||||||| ||||| |||||| |||| ||| |||||||| |
|
|
| T |
235972 |
atgtaacttggcttctcaatgcaggtagaagagagcattggtcactcttttggaaaaccaatccaaacaa |
235903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 5918407 - 5918229
Alignment:
| Q |
61 |
tcatctacatctttttcatatgcaaatggaaaaattcaatgataatatggacagagcacttttagaaaataagtggaaccatgcagaggttgactttggg |
160 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||||||||||| || |||| |||||||||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
5918407 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
5918308 |
T |
|
| Q |
161 |
ttcccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagaga |
239 |
Q |
| |
|
|| |||| | |||||||||||| | ||||||||||||||||| |||| |||||| | ||||||||| ||||||| |
|
|
| T |
5918307 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagaga |
5918229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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