View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9152_low_13 (Length: 250)

Name: NF9152_low_13
Description: NF9152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9152_low_13
NF9152_low_13
[»] chr8 (6 HSPs)
chr8 (20-239)||(6355721-6355935)
chr8 (131-229)||(7462928-7463026)
chr8 (26-70)||(8183378-8183422)
chr8 (132-170)||(6277144-6277182)
chr8 (133-170)||(6426470-6426507)
chr8 (26-70)||(37708749-37708793)
[»] chr7 (5 HSPs)
chr7 (26-70)||(43404942-43404986)
chr7 (26-71)||(18503447-18503492)
chr7 (43-72)||(40200791-40200820)
chr7 (26-71)||(42798284-42798329)
chr7 (36-68)||(28735196-28735228)
[»] scaffold0264 (1 HSPs)
scaffold0264 (36-70)||(13454-13488)
[»] chr2 (2 HSPs)
chr2 (32-68)||(15795939-15795975)
chr2 (26-70)||(15939347-15939391)
[»] chr1 (1 HSPs)
chr1 (26-66)||(36310494-36310534)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 6355721 - 6355935
Alignment:
Q  20 gaagtccgaaccccaaacatccgacttctccatatttaaaatgtgtgagcttccgttactcggttaattgacnnnnnnnnnnnnnnnntagagtgagaaa 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||                ||||||||||||    
T  6355721 gaagtccgaaccctaaacatccgacttctccatatttaaaatgtgtgagctcccgtcactgggttaattgacaaaaagaaaaa-----tagagtgagaaa 6355815  T
Q  120 gagaaatgagttattaccatcagcacttgtagcactaatcaacttgagagctatagaacgtcccaagaaggaagtggcagtatcaagtatattgccagca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6355816 gagaaatgagttattaccatcagcacttgtagcactaatcaacctgagagctatagaacgtcccaagaaggaagtggcagtatcaagtatattgccagca 6355915  T
Q  220 acatcaccaacaacaccaaa 239  Q
    ||||||||||||| ||||||    
T  6355916 acatcaccaacaataccaaa 6355935  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 7462928 - 7463026
Alignment:
Q  131 tattaccatcagcacttgtagcactaatcaacttgagagctatagaacgtcccaagaaggaagtggcagtatcaagtatattgccagcaacatcaccaa 229  Q
    |||||||||||||| | ||||||||||||||||||||||| | |||||| |||||||| ||||||||||| |||| |||||||||||| ||||||||||    
T  7462928 tattaccatcagcagtcgtagcactaatcaacttgagagccacagaacggcccaagaatgaagtggcagtgtcaattatattgccagctacatcaccaa 7463026  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 8183378 - 8183422
Alignment:
Q  26 cgaaccccaaacatccgacttctccatatttaaaatgtgtgagct 70  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||    
T  8183378 cgaaccccagacaacccacttctccatatttaaaatgtgtgagct 8183422  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 6277144 - 6277182
Alignment:
Q  132 attaccatcagcacttgtagcactaatcaacttgagagc 170  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  6277144 attaccatcagcactagtagcactaatcaacctgagagc 6277182  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 6426470 - 6426507
Alignment:
Q  133 ttaccatcagcacttgtagcactaatcaacttgagagc 170  Q
    ||||||||||||||||||||||||||||| || |||||    
T  6426470 ttaccatcagcacttgtagcactaatcaatttaagagc 6426507  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 37708749 - 37708793
Alignment:
Q  26 cgaaccccaaacatccgacttctccatatttaaaatgtgtgagct 70  Q
    ||||||||  |||||| ||||||||| ||||||||||||||||||    
T  37708749 cgaaccccggacatcccacttctccacatttaaaatgtgtgagct 37708793  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 43404986 - 43404942
Alignment:
Q  26 cgaaccccaaacatccgacttctccatatttaaaatgtgtgagct 70  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||    
T  43404986 cgaaccccaaacatctcacttctccacatttaaaatgtgtgagct 43404942  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 18503492 - 18503447
Alignment:
Q  26 cgaaccccaaacatccgacttctccatatttaaaatgtgtgagctt 71  Q
    ||||||||| ||| || ||||||||| |||||||||||||||||||    
T  18503492 cgaaccccagacaccccacttctccacatttaaaatgtgtgagctt 18503447  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 40200791 - 40200820
Alignment:
Q  43 acttctccatatttaaaatgtgtgagcttc 72  Q
    ||||||||||||||||||||||||||||||    
T  40200791 acttctccatatttaaaatgtgtgagcttc 40200820  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 42798329 - 42798284
Alignment:
Q  26 cgaaccccaaacatccgacttctccatatttaaaatgtgtgagctt 71  Q
    ||||| || |||| |||||||||||| |||||||||||||||||||    
T  42798329 cgaactccgaacacccgacttctccacatttaaaatgtgtgagctt 42798284  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 28735228 - 28735196
Alignment:
Q  36 acatccgacttctccatatttaaaatgtgtgag 68  Q
    |||||| ||||||||||||||||||||||||||    
T  28735228 acatcccacttctccatatttaaaatgtgtgag 28735196  T

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Target: scaffold0264 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 13488 - 13454
Alignment:
Q  36 acatccgacttctccatatttaaaatgtgtgagct 70  Q
    |||||| ||||||||||||||||||||||||||||    
T  13488 acatcccacttctccatatttaaaatgtgtgagct 13454  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 15795975 - 15795939
Alignment:
Q  32 ccaaacatccgacttctccatatttaaaatgtgtgag 68  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  15795975 ccaaacatcctacttctccacatttaaaatgtgtgag 15795939  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 15939347 - 15939391
Alignment:
Q  26 cgaaccccaaacatccgacttctccatatttaaaatgtgtgagct 70  Q
    |||||||| |||| || ||||||||| ||||||||||||||||||    
T  15939347 cgaaccccgaacaccccacttctccacatttaaaatgtgtgagct 15939391  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 36310534 - 36310494
Alignment:
Q  26 cgaaccccaaacatccgacttctccatatttaaaatgtgtg 66  Q
    |||||||| ||||||| |||||| |||||||||||||||||    
T  36310534 cgaaccccgaacatcctacttcttcatatttaaaatgtgtg 36310494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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