View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9152_low_15 (Length: 241)
Name: NF9152_low_15
Description: NF9152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9152_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 9837176 - 9837389
Alignment:
| Q |
19 |
ctaacctacctgaatgatgagccataatgcaaaactgaaggagcttgcaagacccnnnnnnntacccaagattttactaccagagtgaatatgtattgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
9837176 |
ctaacctacctgaatgatgagccataatgcaaaactgaaggagcttgcaagacccaaaaaaatacccaagattttactaccagagtgaacatgcattgtt |
9837275 |
T |
|
| Q |
119 |
ccacttttgccctcatgcaggaggttaatgtggaaagtccatatgttaatttcaacacctttgagaaatgtgagaatcattgcccctccaatacatatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9837276 |
ccacttttgccctcatgcaggaggttaatgtggaaagtccatatgttaatttcaacacctttgagaaatgtgagaatcattgcccctccaatacatatta |
9837375 |
T |
|
| Q |
219 |
tggttcctaacacc |
232 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9837376 |
tggttcctaacacc |
9837389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 1225677 - 1225884
Alignment:
| Q |
25 |
tacctgaatgatgagccataatgcaaaactgaaggagcttgcaagacccnnnnnnntacccaagattttactaccagagtgaatatgtattgttccactt |
124 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||| | ||| ||||||| |||||| | ||| ||||| |||| | || || ||||||| || |
|
|
| T |
1225677 |
tacctgaatgatgagccataaggcaaagcagaagcaacttccaagaccaaaaaaaatacccagcaatttgctaccggagttatcatctagtgttccattt |
1225776 |
T |
|
| Q |
125 |
ttgccctcatgcaggaggttaatgtggaaagtccatatgttaatttcaacacctttgagaaatgtgagaatcattgcccctccaatacatattatggttc |
224 |
Q |
| |
|
|| |||| ||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | | ||||||||||||||| | | |||| |||| |
|
|
| T |
1225777 |
tttcccttatgcaagaggttaatgtggaaggtccatatattaatttcaacacctttgagaaatgttaacaacattgcccctccaattcctgttattgttc |
1225876 |
T |
|
| Q |
225 |
ctaacacc |
232 |
Q |
| |
|
| |||||| |
|
|
| T |
1225877 |
ccaacacc |
1225884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University