View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9152_low_16 (Length: 237)

Name: NF9152_low_16
Description: NF9152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9152_low_16
NF9152_low_16
[»] chr2 (2 HSPs)
chr2 (122-215)||(44686043-44686136)
chr2 (116-207)||(26690471-26690562)
[»] chr3 (2 HSPs)
chr3 (117-215)||(24734169-24734267)
chr3 (72-112)||(53837362-53837402)
[»] chr5 (1 HSPs)
chr5 (115-215)||(41360582-41360682)
[»] chr6 (2 HSPs)
chr6 (145-210)||(14802946-14803011)
chr6 (125-210)||(31405549-31405634)
[»] chr1 (3 HSPs)
chr1 (158-215)||(25588852-25588909)
chr1 (72-163)||(6055749-6055840)
chr1 (116-165)||(6055025-6055074)
[»] chr8 (1 HSPs)
chr8 (147-215)||(15051670-15051738)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 44686043 - 44686136
Alignment:
Q  122 tatacatagaatcattatatttgataaatcaaacacaaatataagcacaagtaaatatgattgttcatcaaattaaataaagaatagaacactt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  44686043 tatacatagaatcattatatttgataaatcaaacacaaatataagaacaagtaaatatgactgttcatcaaattaaatagagaatagaaaactt 44686136  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 26690471 - 26690562
Alignment:
Q  116 aaaaattatacatagaatcattatatttgataaatcaaacacaaatataagcacaagtaaatatgattgttcatcaaattaaataaagaata 207  Q
    |||||||| ||||| |||||||| |  | |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  26690471 aaaaattagacatataatcattacaaataataaatcaaacacaaatatatgcacaaataaatatgattcttcatcaaattaaataaagaata 26690562  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 24734169 - 24734267
Alignment:
Q  117 aaaattatacatagaatcattatatttgataaatcaaacacaaatataagcacaagtaaatatgattgttcatcaaattaaataaagaatagaacactt 215  Q
    ||||||| ||||||||||||| ||  | |||||||||||||||||||||||||||| |||||| | | |||||||||||||||| ||||||||| ||||    
T  24734169 aaaattagacatagaatcattttaaataataaatcaaacacaaatataagcacaagcaaatataactcttcatcaaattaaatagagaatagaaaactt 24734267  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 53837362 - 53837402
Alignment:
Q  72 ataataataatcctatgtcacaaaatactcttaagattgta 112  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  53837362 ataatagtaatactatgccacaaaatactcttaagattgta 53837402  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 41360682 - 41360582
Alignment:
Q  115 aaaaaattatacatagaatcattatatttgataaatcaaacacaaatataagcacaagtaaatatgattgttcatcaaattaaataaagaatagaacact 214  Q
    ||||||||| | |||||||  |||||  | |||||||||||||||||||||||| || ||||||||| | ||||||| |||||| ||||||||||| |||    
T  41360682 aaaaaattaaatatagaattcttataaataataaatcaaacacaaatataagcataaataaatatgactcttcatcacattaaacaaagaatagaaaact 41360583  T
Q  215 t 215  Q
    |    
T  41360582 t 41360582  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 14803011 - 14802946
Alignment:
Q  145 ataaatcaaacacaaatataagcacaagtaaatatgattgttcatcaaattaaataaagaatagaa 210  Q
    |||||||||||||||||||||||||||  |||||||||| |||||  ||||||||| |||||||||    
T  14803011 ataaatcaaacacaaatataagcacaaacaaatatgattcttcattgaattaaatagagaatagaa 14802946  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 31405549 - 31405634
Alignment:
Q  125 acatagaatcattatatttgataaatcaaacacaaatataagcacaagtaaatatgattgttcatcaaattaaataaagaatagaa 210  Q
    ||||||||| ||||||  | ||||||  ||||||||||||||||||| || ||| |||| |||||||||||||||| |||||||||    
T  31405549 acatagaattattataagtaataaatagaacacaaatataagcacaaatatatacgattcttcatcaaattaaatagagaatagaa 31405634  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 25588909 - 25588852
Alignment:
Q  158 aaatataagcacaagtaaatatgattgttcatcaaattaaataaagaatagaacactt 215  Q
    |||||| ||||||| ||||||||||| |||||||||||||||| ||||||||| ||||    
T  25588909 aaatattagcacaaataaatatgattcttcatcaaattaaatagagaatagaaaactt 25588852  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 6055749 - 6055840
Alignment:
Q  72 ataataataatcctatgtca-caaaatactcttaagattgtaagaaaaaattatacatagaatcattatatttgataaatcaaacacaaatat 163  Q
    ||||||||||| |||||||| ||||||||||||||||| || || |||||||| | | |||||||| |||  | |||||||||||||||||||    
T  6055749 ataataataattctatgtcaacaaaatactcttaagatcgttag-aaaaattaaatagagaatcatcataaataataaatcaaacacaaatat 6055840  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 6055025 - 6055074
Alignment:
Q  116 aaaaattatacatagaatcattatatttgataaatcaaacacaaatataa 165  Q
    |||||||| ||||||||||||||||  | |||||||||||||||| ||||    
T  6055025 aaaaattagacatagaatcattataaataataaatcaaacacaaacataa 6055074  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 15051738 - 15051670
Alignment:
Q  147 aaatcaaacacaaatataagcacaagtaaatatgattgttcatcaaattaaataaagaatagaacactt 215  Q
    ||||||||||||||||||| ||||| ||||||||| | ||||| |||||||| | |||| | |||||||    
T  15051738 aaatcaaacacaaatataaacacaattaaatatgactcttcatgaaattaaaaagagaacaaaacactt 15051670  T

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