View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9152_low_2 (Length: 587)
Name: NF9152_low_2
Description: NF9152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9152_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 26888404 - 26888099
Alignment:
| Q |
10 |
gtggttatatagccatcaacattatggttaggtctttcacttagcaattagcagacacacacagccactgaatgcataaccagcagactatgtacgactt |
109 |
Q |
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| T |
26888404 |
gtggttatatagctatcaacattatggttaggtctttcgcttagcaattagcagacacacacagccactgaatgcataaccagcagactatgtacgactt |
26888305 |
T |
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| Q |
110 |
tgtttctttatgaaattgaat-gatacctatatcggttctactggttcaatgtcttatccgatttttcaaacgttagttgtaacaagtgttttgtgtaat |
208 |
Q |
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| T |
26888304 |
tgtttctttatgaaattgaattgatacctatatcggttctactggttcaatgtcttatccgatttttcaaacgttagttgtaacaagtgttctgtgtaat |
26888205 |
T |
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| Q |
209 |
aacatcgacatatatgtgaaaaatctccttctacttaacttgtcagtaaataatcacattcgtaaacaaccatttcataagccacttagtgttcctagtc |
308 |
Q |
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| T |
26888204 |
aacatcgacatatatgtgaaaaatctccttctacttaacttgtcagtaaataatcacattcgtaaacaaccatttcataagccacttagtgttcccagtc |
26888105 |
T |
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| Q |
309 |
ccacaa |
314 |
Q |
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|||||| |
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| T |
26888104 |
ccacaa |
26888099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 337 - 571
Target Start/End: Complemental strand, 26888101 - 26887867
Alignment:
| Q |
337 |
caataccagagaaaactccgttgatgtctttaactcatcatcccactgccaccatacccccacttttggaacagtagcacactgtcgtagtgacaacata |
436 |
Q |
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| T |
26888101 |
caataccagagaaaactctgttgatgtctttaactcatcatcccactgccaccatacccccacttttggaacagtagcacactgtcgtagtgacaacata |
26888002 |
T |
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| Q |
437 |
cttgcacatgttgcaagaagaaggttaactccaaaaatcggtctttcttgcttgataggttctttgacattgtcatctgcgtagttaaaacatggtattt |
536 |
Q |
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| T |
26888001 |
cttgcacatgttgcaagaagaaggttaactccaaaaatcggtctttcttgcttgataggttctttgacattgtcatctgcgtagttataacatggtattt |
26887902 |
T |
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| Q |
537 |
tcatcggttggaatgcaacaaatgataactataat |
571 |
Q |
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| T |
26887901 |
tcatcggttggaatgcaacaaatgataactataat |
26887867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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