View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9152_low_7 (Length: 512)
Name: NF9152_low_7
Description: NF9152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9152_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 15223831 - 15224322
Alignment:
| Q |
17 |
aatatatttgtgaaatgctataaagaggagaaagtgatacatggttgatggtttcgtgtgatgcatatttttcgtgtgaataatcttatgaccaaaattt |
116 |
Q |
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| T |
15223831 |
aatatatttgtgaaatactataaagaggagaaagtgatacatggttgatggtttcgtgtgatgcatatttttcgtgtgaataatcttatgaccaaaattt |
15223930 |
T |
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| Q |
117 |
tctcaagcaatattttnnnnnnnnttttgggctataaaattagtcatatgaaaggacctataaaaagaa------gtaatatgaaaggagaggttcacac |
210 |
Q |
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| T |
15223931 |
tctcaagcaatattttaaaatcttttttgggccataaaattagtcatatgaaaggacctataaaaaaaaaaaaaagtaatatgcaaggagaggttcacac |
15224030 |
T |
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| Q |
211 |
gctgctgtaatgagaggtcgacacaataggacaaatgtaggtgtttggtgacaagtttgagcatttaagatatgaatgactgaatgtagctatgactatt |
310 |
Q |
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| T |
15224031 |
gctgctgtaatgagaggtcgacacaataggacaaatgtaggtgtttggtgacaagtttaagcatttaagatatgaatgactgaatgtagctatgactatt |
15224130 |
T |
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| Q |
311 |
agtttgttggatgtagaaattgtccatagaagattcataaataatgacaggaatgactgaatgtaacaaaattatggttcaaattgttatcgaatgtaac |
410 |
Q |
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| T |
15224131 |
agtttgttggatgtagaaattttccatagaagattcataaacaatgacaggaatgactgaatgtaacaaaattatggttcaaattgttatcaaatgtaac |
15224230 |
T |
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| Q |
411 |
ataaaagacaacttaagaagaggagcataatttgttgt-----nnnnnnnnnncttataatttaatatttcatagtgttcattttaagtatt |
497 |
Q |
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| T |
15224231 |
ataaaagacaacttaagaagaggagcataatttggtgtaaaaaaaaataaaaccttataatttaatatttcatagtgttcattttaagtatt |
15224322 |
T |
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