View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9153_high_3 (Length: 419)

Name: NF9153_high_3
Description: NF9153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9153_high_3
NF9153_high_3
[»] chr4 (16 HSPs)
chr4 (7-409)||(6797184-6797586)
chr4 (225-409)||(6815867-6816051)
chr4 (241-409)||(6823088-6823256)
chr4 (243-409)||(6587717-6587880)
chr4 (248-342)||(5597415-5597509)
chr4 (248-409)||(6728803-6728955)
chr4 (242-402)||(6676107-6676267)
chr4 (253-401)||(6544982-6545130)
chr4 (250-401)||(6837679-6837830)
chr4 (297-402)||(6621085-6621190)
chr4 (243-348)||(6753346-6753451)
chr4 (225-363)||(6651501-6651639)
chr4 (242-342)||(6531779-6531879)
chr4 (246-402)||(6498050-6498203)
chr4 (246-376)||(6759151-6759281)
chr4 (15-79)||(6729272-6729336)
[»] scaffold0552 (1 HSPs)
scaffold0552 (225-409)||(7782-7966)
[»] scaffold0373 (1 HSPs)
scaffold0373 (250-401)||(10095-10246)
[»] scaffold0286 (1 HSPs)
scaffold0286 (225-402)||(7063-7240)


Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Complemental strand, 6797586 - 6797184
Alignment:
Q  7 ccatctacagtctgtacaatgaacaaatgtttaaacgcatcaaattaaagatttggatgagcaaaggaaaaaagtttgttatccatatgtactttattta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6797586 ccatctacagtctgtacaatgaacaaatgtttaaacgcatcaaattaaagatttggatgagcaaaggaaaaaagtttgttatccatatgtactttattta 6797487  T
Q  107 caagctctaatgtaaaatgactttaaaaactctgaattaaatttttgcagcattcaaattaaggacgaaataatttgttaggaaaatataacttcgaaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6797486 caagctctaatgtaaaatgactttaaaaactctgaattaaatttgtgccgcattcaaattaaggacgaaataatttgttaggaaaatataacttcgaaaa 6797387  T
Q  207 ccaaaaatttacccttgaaaaatactagatacgcagaagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttccc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6797386 ccaaaaatttacccttgaaaaatactagatacgcagaagagatactcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttccc 6797287  T
Q  307 atttgaactatgagagatttcaaatgattctttgactttgaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagaggtct 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6797286 atttgaactatgagagatttcaaatgattctttgactttgaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagaggtct 6797187  T
Q  407 ctg 409  Q
    |||    
T  6797186 ctg 6797184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 225 - 409
Target Start/End: Complemental strand, 6816051 - 6815867
Alignment:
Q  225 aaaatactagatacgcagaagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagat 324  Q
    |||| ||||||||||| |||| ||||||||||||||| ||| ||||||||||| |  ||||||||| ||| |||||||||||||||||| || |||||||    
T  6816051 aaaaaactagatacgcggaagtgatattcaaacctgtgaaacactgtcttcagcagtattggagacttggcattttgttcccatttgaattaagagagat 6815952  T
Q  325 ttcaaatgattctttgactttgaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagaggtctctg 409  Q
    ||||| ||||| |||||||||||| ||  |||| |||| |||| | ||||||||||||||||| |||||| ||||||| ||||||    
T  6815951 ttcaagtgattttttgactttgaagtgtgaactagaccgaggcaaccatcaattaagggagaatcatacatatcagagatctctg 6815867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 241 - 409
Target Start/End: Complemental strand, 6823256 - 6823088
Alignment:
Q  241 agaagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttg 340  Q
    ||||||| ||||||||||||||||| ||||||||  | ||  |||||||| |||||||||||||| |||||||||| |||| ||||||| ||||||||||    
T  6823256 agaagagttattcaaacctgtaaaacactgtctttggcaattttggagacttggaattttgttcctatttgaactaagagacatttcaagtgattctttg 6823157  T
Q  341 actttgaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagaggtctctg 409  Q
    ||| |||| |||  ||||||||||| | |||||||||||||||||||||||||| |||| || ||||||    
T  6823156 actctgaagtgcgcacttgaccaagtcaatcatcaattaagggagaagcatacatatcaaagatctctg 6823088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 409
Target Start/End: Original strand, 6587717 - 6587880
Alignment:
Q  243 aagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttgac 342  Q
    ||||| ||||||||||||||||| |   ||| ||| || || |||||| ||| |||||||||||||||||| || |||||||||||| |||||| |||||    
T  6587717 aagagttattcaaacctgtaaaaca---tctacagcaatatcggagacttggcattttgttcccatttgaattaagagagatttcaagtgattcattgac 6587813  T
Q  343 tttgaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagaggtctctg 409  Q
      |||| ||||||||| ||| ||   |||||||||||||||||||||||||| ||||||| ||||||    
T  6587814 cctgaagtgcaaactttacctagaaaatcatcaattaagggagaagcatacatatcagagatctctg 6587880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 5597415 - 5597509
Alignment:
Q  248 atattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttgac 342  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||||| |||||||||| || ||||||||||||||  |||||||||    
T  5597415 atattcaaacctgtaaaagactgtcgtcagaaatattggagacttggcattttgtacccatttgaattaagagagatttcaaatatttctttgac 5597509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 409
Target Start/End: Complemental strand, 6728955 - 6728803
Alignment:
Q  248 atattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttgactttga 347  Q
    ||||| ||||||||| || ||||||||||| || ||| ||||||||| |||||||||||||| ||| || |||          ||||||||||||  |||    
T  6728955 atattaaaacctgtagaaaactgtcttcagcaatattagagacatggcattttgttcccattcgaattaagagg---------tgattctttgaccctga 6728865  T
Q  348 aatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagaggtctctg 409  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||| ||||||    
T  6728864 aatgcaaacttgaccagggcaatcatcaataaagggagaagcatacatatcagagatctctg 6728803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 402
Target Start/End: Complemental strand, 6676267 - 6676107
Alignment:
Q  242 gaagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttga 341  Q
    ||||||||||||||||||| |||| ||  ||||||| || ||| || || ||  ||||||||||||||||||  | ||| |||||  | | ||| |||||    
T  6676267 gaagagatattcaaacctggaaaataccatcttcagtaatatttgaaacttgacattttgttcccatttgaataaagagggattttgagtaattgtttga 6676168  T
Q  342 ctttgaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagag 402  Q
    | ||||||||| ||||||| |||||| |||||||||||| |||||| |||||| |||||||    
T  6676167 ccttgaaatgcgaacttgagcaaggcaatcatcaattaaaggagaatcatacatatcagag 6676107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 253 - 401
Target Start/End: Original strand, 6544982 - 6545130
Alignment:
Q  253 caaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttgactttgaaatgc 352  Q
    ||||||||||||||  ||||||| |  | ||||| ||| ||  |||| ||||||||||||| || |||||||||||| | |||| ||| |  ||||||||    
T  6544982 caaacctgtaaaaggttgtcttcggcgatattggggacttgacatttagttcccatttgaattaagagagatttcaagtaattccttggccctgaaatgc 6545081  T
Q  353 aaacttgaccaaggccatcatcaattaagggagaagcatacaaatcaga 401  Q
    ||||||||||||||| |||||||||  | | ||||||||||| ||||||    
T  6545082 aaacttgaccaaggcaatcatcaatagaagaagaagcatacatatcaga 6545130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 401
Target Start/End: Complemental strand, 6837830 - 6837679
Alignment:
Q  250 attcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttgactttgaaa 349  Q
    |||||||||||||||| ||  ||||| | ||  || ||||| ||| ||||||||||||| ||||  | |||| ||||||| | |||||||||| |||||     
T  6837830 attcaaacctgtaaaatacattcttcggcaatgttagagacttggcattttgttcccatctgaataaggagatatttcaagtaattctttgacattgaag 6837731  T
Q  350 tgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcaga 401  Q
    |||||||||||||||||| ||||||| |||| | ||  ||||||| ||||||    
T  6837730 tgcaaacttgaccaaggcaatcatcagttaaagcaggcgcatacagatcaga 6837679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 402
Target Start/End: Original strand, 6621085 - 6621190
Alignment:
Q  297 ttttgttcccatttgaactatgagagatttcaaatgattctttgactttgaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaa 396  Q
    ||||||||||||||||| || || ||||||||| | ||| ||||||  ||||  || ||||||||| |||| |||||||||||| ||||||||||||| |    
T  6621085 ttttgttcccatttgaattaagacagatttcaagtaattatttgaccctgaagggcgaacttgacctaggcaatcatcaattaaaggagaagcatacata 6621184  T
Q  397 tcagag 402  Q
    ||||||    
T  6621185 tcagag 6621190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 6753451 - 6753346
Alignment:
Q  243 aagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttgac 342  Q
    ||||||||||||||||||||||| ||  ||||| | |||||| ||||| ||| |||||||||| ||||||| ||  ||| ||||||| | ||||||||||    
T  6753451 aagagatattcaaacctgtaaaatacattcttcggcaacatttgagacttggcattttgttccgatttgaattaaaagatatttcaagtaattctttgac 6753352  T
Q  343 tttgaa 348  Q
     |||||    
T  6753351 cttgaa 6753346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 363
Target Start/End: Complemental strand, 6651639 - 6651501
Alignment:
Q  225 aaaatactagatacgcagaagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagat 324  Q
    |||||| |||||| |  ||||||||||||||||||| |||      ||||| | || ||| ||||| ||| |||| ||||||||||||| || |||||||    
T  6651639 aaaataatagatatgaggaagagatattcaaacctgaaaattttcatcttcggtaatattagagacttggcatttcgttcccatttgaattaagagagat 6651540  T
Q  325 ttcaaatgattctttgactttgaaatgcaaacttgacca 363  Q
    ||||||| ||| ||||||  |||||||| ||||||||||    
T  6651539 ttcaaataattatttgaccctgaaatgcgaacttgacca 6651501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 342
Target Start/End: Original strand, 6531779 - 6531879
Alignment:
Q  242 gaagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttga 341  Q
    ||||||||||||| ||||| | || || |||||| | || ||||||||| ||| |||| ||||||||||||| || || ||||||||| | |||||||||    
T  6531779 gaagagatattcagacctgcagaacaccgtcttcggcaatattggagacttggtatttcgttcccatttgaattaagaaagatttcaagtaattctttga 6531878  T
Q  342 c 342  Q
    |    
T  6531879 c 6531879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 402
Target Start/End: Original strand, 6498050 - 6498203
Alignment:
Q  246 agatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttgacttt 345  Q
    ||||||||||||||| |||| || |||||| | || ||| || || ||| |||| | ||||||||||| || ||   ||||| | | |||||||||| ||    
T  6498050 agatattcaaacctggaaaataccgtcttcggtaatatttgaaacttggcatttcgatcccatttgaattaaga---atttcgagtaattctttgacctt 6498146  T
Q  346 gaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagag 402  Q
    ||||||  |||||||  |||||  ||||||||||| |||||||||| || |||||||    
T  6498147 gaaatgtgaacttgagtaaggcattcatcaattaaaggagaagcatgcatatcagag 6498203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 376
Target Start/End: Complemental strand, 6759281 - 6759151
Alignment:
Q  246 agatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttgacttt 345  Q
    |||||||||||||||||||| ||||||||| | || ||| |||||  | | |||  ||||||||||||  | |||||||||||| | ||||||||||  |    
T  6759281 agatattcaaacctgtaaaatactgtcttcggcaatatttgagactagaactttctttcccatttgaatcaagagagatttcaagtaattctttgaccct 6759182  T
Q  346 gaaatgcaaacttgaccaaggccatcatcaa 376  Q
    | | | | |||||||||||||| | ||||||    
T  6759181 ggagtacgaacttgaccaaggcaaccatcaa 6759151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 6729336 - 6729272
Alignment:
Q  15 agtctgtacaatgaacaaatgtttaaacgcatcaaattaaagatttggatgagcaaaggaaaaaa 79  Q
    ||||||||||||||||||||||||||| || || ||||||| |||  || || ||||||||||||    
T  6729336 agtctgtacaatgaacaaatgtttaaatgcctcgaattaaaaattgagaggatcaaaggaaaaaa 6729272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 225 - 409
Target Start/End: Original strand, 7782 - 7966
Alignment:
Q  225 aaaatactagatacgcagaagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagat 324  Q
    |||| ||||||||||| |||| ||||||||||||||| ||| ||||||||||| |  ||||||||| ||| |||||||||||||||||| || |||||||    
T  7782 aaaaaactagatacgcggaagtgatattcaaacctgtgaaacactgtcttcagcagtattggagacttggcattttgttcccatttgaattaagagagat 7881  T
Q  325 ttcaaatgattctttgactttgaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagaggtctctg 409  Q
    ||||| ||||| |||||||||||| ||  |||| |||| |||| | ||||||||||||||||| |||||| ||||||| ||||||    
T  7882 ttcaagtgattttttgactttgaagtgtgaactagaccgaggcaaccatcaattaagggagaatcatacatatcagagatctctg 7966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 401
Target Start/End: Complemental strand, 10246 - 10095
Alignment:
Q  250 attcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagatttcaaatgattctttgactttgaaa 349  Q
    |||||||||||||||| ||  ||||| | ||  || ||||| ||| ||||||||||||| ||||  | |||| ||||||| | |||||||||| |||||     
T  10246 attcaaacctgtaaaatacattcttcggcaatgttagagacttggcattttgttcccatctgaataaggagatatttcaagtaattctttgacattgaag 10147  T
Q  350 tgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcaga 401  Q
    |||||||||||||||||| ||||||| |||| | ||  ||||||| ||||||    
T  10146 tgcaaacttgaccaaggcaatcatcagttaaagcaggcgcatacagatcaga 10095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 402
Target Start/End: Complemental strand, 7240 - 7063
Alignment:
Q  225 aaaatactagatacgcagaagagatattcaaacctgtaaaagactgtcttcagaaacattggagacatggaattttgttcccatttgaactatgagagat 324  Q
    |||||| |||||| |  ||||||||||||||||||| |||      ||||| | || ||| ||||| ||| |||| ||||||||||||| || || ||||    
T  7240 aaaataatagatatgaggaagagatattcaaacctgaaaattttcatcttcggtaatattagagacttggcatttcgttcccatttgaattaagacagat 7141  T
Q  325 ttcaaatgattctttgactttgaaatgcaaacttgaccaaggccatcatcaattaagggagaagcatacaaatcagag 402  Q
    ||||| | ||| ||||||  ||||  || ||||||||| |||| |||||||||||| ||||||||||||| |||||||    
T  7140 ttcaagtaattatttgaccctgaagggcgaacttgacctaggcaatcatcaattaaaggagaagcatacatatcagag 7063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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