View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9153_low_12 (Length: 303)
Name: NF9153_low_12
Description: NF9153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9153_low_12 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 31003584 - 31003297
Alignment:
| Q |
19 |
agttgaatactcccacttgttatatcaagaagataaatcagacgatccttgtacttgcaatgccaaagtctgattgaactagttattcaaggttatatcc |
118 |
Q |
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| T |
31003584 |
agttgaatactcccacttgttatatcaagaagatgaatcagacaatccttgtacttgcaatgccaaagtctgattgaactagttattcaagattatattg |
31003485 |
T |
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| Q |
119 |
taatccttgtttctctaaatttcatttttctattcaaacttaaagaagaataagttgtcacaacatctgttcatgttagtattttcatgttttgatagca |
218 |
Q |
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| T |
31003484 |
taatccctgtttctctaaatttcatttttctattcaaacttaaagaagaataagttgtcacaacatttgttcatattagtattttcatgttttgatagca |
31003385 |
T |
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| Q |
219 |
agtatttgtgttcaggttatgctatgttgtggttggtacatcgat-----atactgcgcttctgtgagatgctgcaaaattttggggttc |
303 |
Q |
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| T |
31003384 |
agtatttctgttccgattatgctatgttgtggttggtacatcgattcctcttagtgcgcttctgt--gatgctgcaaaattttggggttc |
31003297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 31001959 - 31001786
Alignment:
| Q |
19 |
agttgaatactcccacttgttatatcaagaagataaatcagacgatccttgtacttgcaatgccaaagtctgattgaactagttattcaaggttatatcc |
118 |
Q |
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| T |
31001959 |
agttgaatactcccacttgttatatcaagaagataaatcagacgatccttgtacttgcaatgccaaagtccgattgaactagttattcaaggttatatcg |
31001860 |
T |
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| Q |
119 |
taatccttgtttctctaaatttcatttttctattcaaacttaaagaagaataagttgtcacaacatctgttcat |
192 |
Q |
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| T |
31001859 |
taatccttgtttctctaaatttcatttttctattcaaacttaaagaagaataagttgtcacaacatttgttcat |
31001786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 9470030 - 9470210
Alignment:
| Q |
75 |
gcaatgccaaagtctgattgaactagttattcaaggttatatcctaatccttgtttctctaaatttcatttttctattcaaacttaaagaagaataagtt |
174 |
Q |
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| T |
9470030 |
gcaatgccaacgtctgattgaactagttattcaaggttatatcg-actccttgtttctctaaatttcatttttctattcaaacttaaaaaagaatcaatt |
9470128 |
T |
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| Q |
175 |
gtcacaacatctgttcatgttagt-attttcatgttttgatagcaagtatttgtgttcaggttatgctatgttgtggttggt |
255 |
Q |
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| T |
9470129 |
gtcacaacacttgttcatgttagtctttttcattttttgaaagcaagtgtttgtgttccatttatgatatgttgtggttggt |
9470210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 39174 - 38971
Alignment:
| Q |
68 |
tgtacttgcaatgccaaagtctgattgaactagttat--tcaaggttatatcctaatccttgtttctctaaatttcatttttctattcaaacttaaagaa |
165 |
Q |
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| T |
39174 |
tgtacttgaaatgccaaagtctgatggaactaattatattcaaggttataccatactccttgtttctctaaatttcatttttctattcaaacttaaaaaa |
39075 |
T |
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| Q |
166 |
---------gaataagttgtcacaacatctgttcatgttagta-ttttcatgttttgatagcaagtatttgtgttcaggttatgctatgttgtggttggt |
255 |
Q |
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| T |
39074 |
aataaaaataaatcaattgtcacaac-tct-ttcatgttagtatttttcatgttttgaaagcaagtatttgtgttccatttatgctatgttgtggttggt |
38977 |
T |
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| Q |
256 |
acatcg |
261 |
Q |
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| T |
38976 |
gcatcg |
38971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 68 - 255
Target Start/End: Original strand, 2530786 - 2530986
Alignment:
| Q |
68 |
tgtacttgcaatgccaaagtctgattgaactagttattcaaggttatatcctaatccttgtttctctaaatttcatttttctattcaaactt-------- |
159 |
Q |
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| T |
2530786 |
tgtacttgcaatgtcaaagtctgattgaactagttattcaaggttata--ccactccttgtttctctaaatttcatttttcaattcaaacttaaaaaaaa |
2530883 |
T |
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| Q |
160 |
------aaagaagaataagttgtcacaacatctgttcatgttagta-ttttcatgttttgatagcaagtatttgtgttcaggttatgctatgttgtggtt |
252 |
Q |
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| T |
2530884 |
aaaaaaaaaaaaaaatcaattgtcacaacacttgtacatgttagtatttttcatgttttgaaagcaagtatttgtgttccatttatgctatgttgtggtt |
2530983 |
T |
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| Q |
253 |
ggt |
255 |
Q |
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||| |
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| T |
2530984 |
ggt |
2530986 |
T |
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