View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9153_low_15 (Length: 296)

Name: NF9153_low_15
Description: NF9153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9153_low_15
NF9153_low_15
[»] chr6 (8 HSPs)
chr6 (128-280)||(12800100-12800256)
chr6 (29-126)||(12799923-12800020)
chr6 (129-228)||(12770769-12770868)
chr6 (132-208)||(24977770-24977846)
chr6 (152-280)||(12777047-12777179)
chr6 (132-208)||(24976339-24976415)
chr6 (135-212)||(12766760-12766837)
chr6 (135-209)||(3894855-3894929)
[»] chr5 (1 HSPs)
chr5 (132-208)||(40235002-40235078)
[»] chr3 (7 HSPs)
chr3 (132-212)||(20204887-20204967)
chr3 (135-208)||(16724876-16724949)
chr3 (135-208)||(18177746-18177819)
chr3 (133-206)||(24835071-24835144)
chr3 (134-206)||(22261736-22261808)
chr3 (134-206)||(22266691-22266763)
chr3 (135-202)||(35269852-35269919)
[»] chr2 (3 HSPs)
chr2 (132-208)||(43822042-43822118)
chr2 (133-208)||(44909797-44909872)
chr2 (133-207)||(14106066-14106140)
[»] chr1 (5 HSPs)
chr1 (132-208)||(31279277-31279353)
chr1 (133-208)||(9826455-9826530)
chr1 (135-208)||(4449635-4449708)
chr1 (133-207)||(9812059-9812133)
chr1 (133-208)||(9751436-9751510)
[»] chr4 (2 HSPs)
chr4 (133-208)||(39936153-39936228)
chr4 (134-207)||(28745642-28745715)
[»] scaffold0432 (1 HSPs)
scaffold0432 (133-208)||(5821-5896)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 128 - 280
Target Start/End: Original strand, 12800100 - 12800256
Alignment:
Q  128 atggttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgttaattaaattatgcaa 227  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  12800100 atggttttattagagcctggtttcgatccagggacctgtaggttatgggcccaccacgcttccgccgcaccactctgattttgttaattaaattatgcaa 12800199  T
Q  228 tcttgattaatgatctgatatacatctttgc----taacctaactcattcataaatc 280  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  12800200 tcttgattaatgatctgatatacatctttgcttattaacctaactcattcataaatc 12800256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 12799923 - 12800020
Alignment:
Q  29 ttgttacaggagagtgaataaaaatcataaatcgttgcctatggagaaggagacaaagacaggatgttcaaagagaaatttagatgaaaaaggaagta 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12799923 ttgttacaggagagtgaataaaaatcataaatcgttgcctatggagaaggagacaaagacaggatgttcaaagagaaatttagatgaaaaaggaagta 12800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 12770769 - 12770868
Alignment:
Q  129 tggttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgttaattaaattatgcaat 228  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  12770769 tggttttatcagagcctggtttcaatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatcttgttgattaaattatacaat 12770868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 24977770 - 24977846
Alignment:
Q  132 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24977770 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 24977846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 12777047 - 12777179
Alignment:
Q  152 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgttaattaaattatgcaatcttgattaatgatctgatataca 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||| ||||||| || | ||||    
T  12777047 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatgttgttgattgaattatgcaattttgactaatgatatgctttaca 12777146  T
Q  252 tctttgc----taacctaactcattcataaatc 280  Q
    ||||| |    ||||||||||||||||| ||||    
T  12777147 tctttccttaataacctaactcattcatgaatc 12777179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 24976339 - 24976415
Alignment:
Q  132 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24976339 ttttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 24976415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 12766760 - 12766837
Alignment:
Q  135 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgtt 212  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||    
T  12766760 tatcagagcctggtttcgatccagggacctatgggttatgggcccaccatgcttccgctgcgccactctgatcttgtt 12766837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 3894855 - 3894929
Alignment:
Q  135 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttt 209  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3894855 tatcagagtctggtttctatccaaggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatttt 3894929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 40235002 - 40235078
Alignment:
Q  132 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40235002 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 40235078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 20204967 - 20204887
Alignment:
Q  132 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattttgtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20204967 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatattgtt 20204887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 16724876 - 16724949
Alignment:
Q  135 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16724876 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 16724949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 18177746 - 18177819
Alignment:
Q  135 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18177746 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 18177819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 24835071 - 24835144
Alignment:
Q  133 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835071 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 24835144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 22261808 - 22261736
Alignment:
Q  134 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 206  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22261808 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22261736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 22266691 - 22266763
Alignment:
Q  134 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 206  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22266691 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22266763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 35269852 - 35269919
Alignment:
Q  135 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35269852 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgtgccactc 35269919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 43822118 - 43822042
Alignment:
Q  132 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43822118 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 43822042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 44909872 - 44909797
Alignment:
Q  133 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44909872 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 44909797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 14106066 - 14106140
Alignment:
Q  133 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14106066 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 14106140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 31279277 - 31279353
Alignment:
Q  132 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279277 ttttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 31279353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 9826455 - 9826530
Alignment:
Q  133 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9826455 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 9826530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 4449635 - 4449708
Alignment:
Q  135 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4449635 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 4449708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 9812059 - 9812133
Alignment:
Q  133 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 207  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9812059 tttatcagagcctggttttaatccagggacctatgggttatgggcccaccacgcttccgctgcgccactctgatt 9812133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 9751436 - 9751510
Alignment:
Q  133 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    ||||| |||| ||| |||||||||||||| ||||| ||||| | |||||||||||||| |||||||||||| ||||    
T  9751436 tttattagagtctgatttcgatccagggatctgtgagttatagacccaccacgcttcc-ctgcgccactctaattt 9751510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 39936228 - 39936153
Alignment:
Q  133 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39936228 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 39936153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 28745642 - 28745715
Alignment:
Q  134 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28745642 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 28745715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 5821 - 5896
Alignment:
Q  133 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 208  Q
    ||||| ||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||    
T  5821 tttattagagcctagtttcgatccaggaacctatgggttatggacccaccacgcttccgctgcgtcactctgattt 5896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University