View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9153_low_3 (Length: 862)
Name: NF9153_low_3
Description: NF9153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9153_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 706; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 83 - 846
Target Start/End: Original strand, 29374339 - 29375098
Alignment:
| Q |
83 |
tttgacagaatcacagtgtgtcgctatgattttagnnnnnnnctagacttttgagcttcaacaaaatcagtgtcaatgtgatttcgttaaactcgccatc |
182 |
Q |
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| T |
29374339 |
tttgacagaatcacagtgtgtcgctatgattttagaaaaaaactagacttttgagcttcaacaaaatcagtgtcaatgtgatttcgttaaactcgccatc |
29374438 |
T |
|
| Q |
183 |
attccacatgcacttagataagtacttattccaaagtggttatcatatacgagtttatgccataagctcttaataagttatttgcatttagatgtgtatg |
282 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29374439 |
attctacatgcacttagataagtacttattccaaagtggttatcatatacgagtttatgccataagctcttaataagttatttgcatttagatgtgtatg |
29374538 |
T |
|
| Q |
283 |
ttataaaggtatttagaactattttcacatcaaaaacagaatatgaatgaggtctatagaaactgttttcacagattatcttaggaagattattataaga |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29374539 |
ttataaaggtatttagaactattttcacatcaaaaacagaatatga----ggtctatagaaactgttttcacagattatcttaggaagtttattataaga |
29374634 |
T |
|
| Q |
383 |
aatcaaaaacagcttatgaatgcgttataagacataacctataagttcatccaaacacgtatatattgaataacatcattgctgaaacctattgatctct |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29374635 |
aatcaaaaacagcttatgaatgcgttataagacataacctataatttcatccaaacacgtatatattgaataacatcattgctgaaacctattgatctct |
29374734 |
T |
|
| Q |
483 |
cttgatgcctagtttgtgttgttgatttgtaaacaggagaggttatttctgtacaaagaaaggatcactggtagagcttgcagaggttgagcctccaagg |
582 |
Q |
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| T |
29374735 |
cttgatgcctagtttgtgttgttgatttgtaaacaggagaggttatttctgtacaaagaaaggatcactggtagagcttgcagaggttgagcctccaagg |
29374834 |
T |
|
| Q |
583 |
taaaattcaagttttgaagcagatatttgtatatataagttcgatgctaagaaaatattgctaatccaggccctattttgccatacatatagaacagatg |
682 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29374835 |
taaaattcaagttttgaagcagatatttgtatatataagttcgatgctaagaaaatattgctaatccaggccctattttgccatacatatagaacagatg |
29374934 |
T |
|
| Q |
683 |
gataaatcatggccaaccaggtggagcaaatgtagcagcaataactgatgttgcctctacacgagaagtagtatacaccataaggtgtgtgtgcacgcgc |
782 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29374935 |
gataaatcatggccaaccaggtggagcaaatgtagcagcaataactgatgttgcctctacacgagaagtagtatacaccataaggtgtgtgtgcacgcga |
29375034 |
T |
|
| Q |
783 |
gcgcaatatgcaacattattgttctttagtaaatgttttaatcttccgtgctgtcgttaatatg |
846 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29375035 |
gcgcaatatgcaacattattgttctttagtaaatgttttaaacttccgtgctgtcgttaatatg |
29375098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 29374228 - 29374300
Alignment:
| Q |
13 |
tggtgttgtgacagatgataggaagtaagtacacaattaaaattgtttgagtctttgagattcaggggcgttt |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29374228 |
tggtgttgtgacagatgataggaagtaagtacacaattaaaattgtttgagtctttgagattcaggggcgttt |
29374300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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