View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9153_low_4 (Length: 751)
Name: NF9153_low_4
Description: NF9153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9153_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 248 - 733
Target Start/End: Original strand, 36277472 - 36277962
Alignment:
| Q |
248 |
tccttagctatatggtgtcgaaccacttgaaagtccagtattgtctggagggaaacctggtgagccttccttcttattatttattactatagcaagcttc |
347 |
Q |
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| T |
36277472 |
tccttagctatatggtgtcgaaccacttgaaagtccagtattgtctggagggaaacctggtgagccttccttcttattatttatcactattgcaagcttc |
36277571 |
T |
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| Q |
348 |
attcatatcattgatcttaagttccctaatgcacattgagggaaagtatcacctttaccgatagtatcacctgctgacagtttatgtgccttgacgaatc |
447 |
Q |
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| T |
36277572 |
attcatatcattgatcttaagttccctaatgcacattgaggaaaagtatcacctttaccgatagtatcacctgctgacagtttatgtgccttgacgaatc |
36277671 |
T |
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| Q |
448 |
aaatgtgcaaatactgtcaccgattgttactgcctcgatgattatatgcacttgt-----atatgcccacttgatgagtacttgtaaaatcatggattct |
542 |
Q |
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| T |
36277672 |
aaatgtgcaaataccgtcaccgattgttactgcctcgatgattatatgcacttgtacataatatgcccacttgatgagtacttgtaaaatcatggattct |
36277771 |
T |
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| Q |
543 |
gatttctgtgtggtacttactacagaatcagtagtaagcaaatcaataccattttgcttggatatcaaaattgtatcgattatgattttcttctcacctt |
642 |
Q |
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| T |
36277772 |
gatttctgtgtgttacttactacagaatcagtagtaagcaaatcaataccattttgcttggatatcaaaattgtatcgattatgattttcttctcacctt |
36277871 |
T |
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| Q |
643 |
tgctttgttatatccaacaagaagaaaaagttgtattaacttttcactgttcattttgtacattgctttgtaatttgtatgactgtagtga |
733 |
Q |
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| T |
36277872 |
tgctttgttatatccaacaagaagaaaaagttgtattaacttttcactgttcattttgtacattgctttgtaatttgtatgactgtagtga |
36277962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 36277238 - 36277409
Alignment:
| Q |
14 |
cagagatctggaaaagctctggcgggaaagttgatgcccttgtttctggtataggaaccggaggtacagtaacaggtgctggaaaatatttgaaagagca |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277238 |
cagagatctggaaaagctctggtgggaaagttgatgcccttgtttctggtataggaaccggaggtacagtaacaggtgctggaaaatatttgaaagagca |
36277337 |
T |
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| Q |
114 |
gaaccctgatattaaggttaggattatgattctttaactgtataacattaccttctataaatttctaggcat |
185 |
Q |
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| T |
36277338 |
gaaccctgatattaaggttaggattatgattctttaactgtataacattaccttctataaatttctaggcat |
36277409 |
T |
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